Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU54552 |
| length | 203 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G46175 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 14182991 ~ 14183193 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU54243 | lncRNA | upstream | 286456 | 13894142 ~ 13896535 (+) | True | G45875 |
| XR_004577873.1 | lncRNA | upstream | 293142 | 13889279 ~ 13889849 (+) | True | LOC117596881 |
| XR_003404657.2 | lncRNA | upstream | 537653 | 13644120 ~ 13645338 (+) | True | LOC113545747 |
| TU54050 | lncRNA | upstream | 583976 | 13521839 ~ 13599015 (+) | True | G45712 |
| TU54051 | lncRNA | upstream | 588166 | 13522906 ~ 13594825 (+) | True | G45713 |
| TU54553 | lncRNA | downstream | 244 | 14183437 ~ 14183646 (+) | True | G46176 |
| TU54602 | lncRNA | downstream | 103457 | 14286650 ~ 14288287 (+) | True | G46217 |
| TU54606 | lncRNA | downstream | 103457 | 14286650 ~ 14288218 (+) | False | G46217 |
| TU54604 | lncRNA | downstream | 104225 | 14287418 ~ 14288218 (+) | False | G46217 |
| TU54753 | lncRNA | downstream | 204836 | 14388029 ~ 14388311 (+) | True | G46337 |
| XM_026939331.2 | mRNA | upstream | 126528 | 14035638 ~ 14056463 (+) | True | fancl |
| XM_026941819.2 | mRNA | upstream | 549513 | 13588316 ~ 13633478 (+) | True | bcl11aa |
| XM_026935703.2 | mRNA | upstream | 681941 | 13498048 ~ 13501050 (+) | True | pcbd1 |
| XM_026939104.2 | mRNA | upstream | 752731 | 13419948 ~ 13430260 (+) | True | sec23ip |
| XM_026937959.2 | mRNA | upstream | 778316 | 13385486 ~ 13404675 (+) | True | inpp5f |
| XM_026943791.2 | mRNA | downstream | 10641 | 14193834 ~ 14197074 (+) | True | soul2 |
| XM_034303068.1 | mRNA | downstream | 30176 | 14213369 ~ 14286542 (+) | False | slc24a3 |
| XM_026944022.2 | mRNA | downstream | 30209 | 14213402 ~ 14286542 (+) | True | slc24a3 |
| XM_026941983.2 | mRNA | downstream | 106189 | 14289382 ~ 14292863 (+) | True | si:dkey-187a12.4 |
| XM_026937917.2 | mRNA | downstream | 113141 | 14296334 ~ 14328299 (+) | True | rin2 |
| TU54033 | other | upstream | 681945 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 1149743 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 1183029 | 12982406 ~ 12999962 (+) | False | col17a1b |
| XR_004577802.1 | other | upstream | 1246189 | 12929559 ~ 12936802 (+) | False | spef1 |
| XR_003404567.2 | other | downstream | 30209 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| XR_004577898.1 | other | downstream | 178174 | 14361367 ~ 14367446 (+) | False | cgas |
| TU55629 | other | downstream | 1610235 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 1887521 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 1887566 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
