RNA id: TU54560


Basic Information

Item Value
RNA id TU54560
length 319
lncRNA type intronic
GC content 0.38
exon number 1
gene id G46183
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14183768 ~ 14184086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaattaaaaagcagcttcttgttttttttttctcagaagtGGCTCTTAGGCTCTTAAGTTATGATTAGGAAGAACATATTTTGAATATGTATCGTAGGTTGAACAGTATGTgtggggaaagagagagagagagataatctTGACATCATCAGTGTGCAGAAGTGTCACTTGAAGTAAACAGGAGGTACTTTTCATCACCATATACTCCAGGTCACACTGGAAGattgcgtgagtgtgtgtgtgtgtgtatgtgtgtataccaAGTAGTATATGTGTGAAGAATGTGAGATACATATATAGTGgggtccaaaggtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404420.2 lncRNA downstream 542244 13632755 ~ 13641524 (-) True LOC113543535
TU54100 lncRNA downstream 719029 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 752869 13430365 ~ 13430899 (-) False csgalnact2
TU53934 lncRNA downstream 870612 13312950 ~ 13313156 (-) True G45622
TU53928 lncRNA downstream 873528 13308094 ~ 13310240 (-) True G45616
TU54707 lncRNA upstream 105470 14289556 ~ 14291633 (-) True G46304
TU55041 lncRNA upstream 429455 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 430430 14614516 ~ 14614764 (-) True G46591
TU55026 lncRNA upstream 433567 14617653 ~ 14625970 (-) True G46576
TU55183 lncRNA upstream 753010 14937096 ~ 14937309 (-) True G46680
XM_026939319.2 mRNA downstream 114790 14056142 ~ 14068978 (-) True vrk2
XM_034302995.1 mRNA downstream 150051 13852493 ~ 14033717 (-) False LOC117596880
XM_034302994.1 mRNA downstream 150051 13852493 ~ 14033717 (-) True LOC117596880
XM_034302759.1 mRNA downstream 611958 13556873 ~ 13571810 (-) False papolg
XM_034302758.1 mRNA downstream 612033 13556873 ~ 13571735 (-) False papolg
XM_026945080.2 mRNA upstream 184101 14368187 ~ 14387373 (-) True ddx43
XM_026945088.2 mRNA upstream 184101 14368187 ~ 14386599 (-) False ddx43
XM_026939778.2 mRNA upstream 204901 14388987 ~ 14514886 (-) False kcnq5a
XM_026939770.2 mRNA upstream 204901 14388987 ~ 14514885 (-) False kcnq5a
XM_034302935.1 mRNA upstream 204901 14388987 ~ 14514885 (-) False kcnq5a
XR_004577863.1 other downstream 1152572 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 1449486 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 1514877 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 1515203 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 1544166 12639530 ~ 12639602 (-) True trnak-cuu_1
TU55100 other upstream 595779 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 1229855 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2795045 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2795045 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2795045 16979131 ~ 16982729 (-) False morn4

Expression Profile