RNA id: TU54849


Basic Information

Item Value
RNA id TU54849
length 1708
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113541837
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14617608 ~ 14626490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCACAGAGGAAACGGAAACAGCACCACGGAGGAAACCAGCTTCTCTGCCCTCATATCAGTTCAGCTCATTGGATACATCCGGAGGCTTTCAACGTCTGAGGctagtgtgtgtaggtgggtgtGGTTTGTAGACCTCTGAGGAAGTGGAGCTCCATTGTAAGAATTGCTGCTGGGTCAGGAGGTGAGGCTGAAGGCTCTTTTTGAAGCCCCTAACCCAGCAGGGTGGGACAACTCCAAATGCTTCCAAGTACTCCTGTCCAGACTAAGCTGTTGTCACGGCGACAAAGTGGCCCAAGAGGAAATGGCTATTTATACCCACCAAGTGCAGAAAGAGAGGCACCCTTCCAATGGGCGGCATTTGACTCACATCCTCCAGCAATCTGAGTTTGGGCCTTCGCGTGGACCCACTTTCTCATCCGTCGTccagtatttaaaaaagataCTTCTGCTACCATCTTGCAGTGTTTTACATACTGATGTTTTGGGAAACCATGCTACACATATATGCCAACACTCAAGCAACTTTTGATCCTTGAGATATTACTGGGCTCACTCTCCATATGCAGTATCTTGTTGTATATGCTGTCCTGTTGATTTGTTTCCTCTTGCCCTTCTGTCCCACAGTGACACTCAGGATGCATGCCTGGTGGTCTGTGGTTCCCACCCTCTCCCACTGCAATTATTTTGGTCTACTTTTATTCTGTGACATCATTACAGCAGCTGCTCCTTCTTAAACCACAAGGTGGCGGACTGTCTCTAAAGATGTGAGATGCATTTATAGAACCGGCTGTGCAAACACTTAACAGAAAATTATTTTGACATGGGTGGCTTTGAAATGTAGCCAAAGACTGAACACCGAAAGTGAACAAGCTACAAGAAATCAGCAtttattctgctgtttgatTTCAGTTGCATTACTATGtgagttttttccccaaaagttATTTGAATCAAAGTCTTTAAGGTAATACACAAAAGTTTGTTTAGACCATATCAAAGTTCCTAAcaacttaaaaagaaaaagtcctGAAGGTAGCACTCCTGTATTAGATGATGGGGCAGACAGGTGAGATGGTCTTATGGCATAAGTTCCTAATCTACAGTATGAACCATCTTCTTACAAAGAATAAgcaaaagttatttattttaatttaattttaaatttatttattttttttgttcccccccttttttttgtgGCCCTTGAGTCCGgattgctgtgtgtttttctgatcGTTATATCTGTCCTCTGCAGGTGAGCAGAATTCGGGGAATTGGAGTAATGAAGTGATGTTTACATGGCAAGctaggaaaaaagaagaaaacattacAGTAAGATGAAATGCATATCCTGGGCAGTGCATGTGACACACATTGTTCGACATTGTACACTGCTGAATAACTTGTAAGCAGTTTGGATGTATAAACAAGAACCTcataataaaattgtaatgccAAGTCAAAaggtaatttttaaatatttatgacaATTGTTTACTGGTTAAAAGTTCATTGTTTTTCTGTAGGGGAGTTTGCAACATTTCAGGTTATTACAATCATTTACAGATGCTAAAGCAAAGGTTTACAGTACCTGAATCACTTAAGCAAAGTTATTGTTGGAATATGCAATGTACCATTATAGTactagtatttaatttaaatgctatgtgttgtaatgtatatattttgtttaataaatcattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54753 lncRNA upstream 236162 14388029 ~ 14388311 (+) True G46337
TU54602 lncRNA upstream 336186 14286650 ~ 14288287 (+) True G46217
TU54606 lncRNA upstream 336255 14286650 ~ 14288218 (+) False G46217
TU54604 lncRNA upstream 336255 14287418 ~ 14288218 (+) False G46217
TU54553 lncRNA upstream 440827 14183437 ~ 14183646 (+) True G46176
TU55126 lncRNA downstream 339433 14965906 ~ 14967115 (+) True G46638
TU55127 lncRNA downstream 339433 14965906 ~ 15011989 (+) False G46638
TU55130 lncRNA downstream 346117 14972590 ~ 14973888 (+) False borcs7
TU55220 lncRNA downstream 387650 15014123 ~ 15015181 (+) True G46713
TU55286 lncRNA downstream 453340 15079813 ~ 15084310 (+) True G46765
XM_026940158.1 mRNA upstream 12503 14595202 ~ 14611970 (+) True asrgl1
XM_034302783.1 mRNA downstream 32283 14658756 ~ 14672999 (+) True b3gat2
XM_026936868.2 mRNA downstream 32283 14658756 ~ 14672999 (+) False b3gat2
XM_026943359.2 mRNA downstream 231456 14857929 ~ 14871099 (+) True slc2a15a
XM_034301900.1 mRNA downstream 272349 14898822 ~ 14904713 (+) False fgf8a
XM_034301895.1 mRNA downstream 272352 14898825 ~ 14904713 (+) True fgf8a
XR_004577898.1 other upstream 257027 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 341305 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1123427 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1591225 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1624511 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 1166955 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1444241 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1444286 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1608062 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4714877 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile