Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU55127 |
| length | 865 |
| lncRNA type | read_through |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G46638 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 14965906 ~ 15011989 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404224.2 | lncRNA | upstream | 339416 | 14617616 ~ 14626490 (+) | True | LOC113541837 |
| TU54849 | lncRNA | upstream | 339433 | 14624473 ~ 14626473 (+) | False | LOC113541837 |
| TU54851 | lncRNA | upstream | 339534 | 14617654 ~ 14626372 (+) | False | LOC113541837 |
| TU54850 | lncRNA | upstream | 339534 | 14624473 ~ 14626372 (+) | False | LOC113541837 |
| XR_004577856.1 | lncRNA | upstream | 339680 | 14617608 ~ 14626226 (+) | False | LOC113541837 |
| TU55220 | lncRNA | downstream | 2134 | 15014123 ~ 15015181 (+) | True | G46713 |
| TU55286 | lncRNA | downstream | 67824 | 15079813 ~ 15084310 (+) | True | G46765 |
| TU55287 | lncRNA | downstream | 69664 | 15081653 ~ 15084310 (+) | False | G46765 |
| TU55373 | lncRNA | downstream | 407040 | 15419029 ~ 15419642 (+) | True | G46833 |
| TU55393 | lncRNA | downstream | 461212 | 15473201 ~ 15473870 (+) | True | G46849 |
| XM_026939277.2 | mRNA | upstream | 4713 | 14946833 ~ 14961193 (+) | True | wbp1la |
| XM_026945446.2 | mRNA | upstream | 29702 | 14910899 ~ 14936204 (+) | True | fbxw4 |
| XM_034301900.1 | mRNA | upstream | 61193 | 14898822 ~ 14904713 (+) | False | fgf8a |
| XM_034301895.1 | mRNA | upstream | 61193 | 14898825 ~ 14904713 (+) | True | fgf8a |
| XM_026943359.2 | mRNA | upstream | 94807 | 14857929 ~ 14871099 (+) | True | slc2a15a |
| XM_026945712.2 | mRNA | downstream | 12935 | 15024924 ~ 15029815 (+) | True | polr1c |
| XM_026941657.2 | mRNA | downstream | 22074 | 15034063 ~ 15058779 (+) | False | ldb1a |
| XM_026941697.2 | mRNA | downstream | 22075 | 15034064 ~ 15058779 (+) | False | ldb1a |
| XM_026941635.2 | mRNA | downstream | 22075 | 15034064 ~ 15058779 (+) | False | ldb1a |
| XM_026941626.2 | mRNA | downstream | 22077 | 15034066 ~ 15058779 (+) | False | ldb1a |
| XR_004577898.1 | other | upstream | 598460 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003404567.2 | other | upstream | 682738 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| TU54033 | other | upstream | 1464860 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 1932658 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 1965944 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU55629 | other | downstream | 781439 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 1058725 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 1058770 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55884 | other | downstream | 1222546 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003403773.2 | other | downstream | 4329361 | 19341350 ~ 19356098 (+) | True | sfxn5a |
