RNA id: TU55286


Basic Information

Item Value
RNA id TU55286
length 4498
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G46765
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15079813 ~ 15084310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatttttccAATAGTGTCTTCAGAAGTATTTGTTCCTATATGAACATGccaacaaaacagcaaacaacATTTTCATGGCTTCTGCATATCTATATAGTTATATCACCAAAGCAATTGTTAAATGCTTTATCATGCATACTTAAAGTCACCCTAAATCTTTCTGGGGAATTTCTTAAGAGCACGCAGACTGGGcaaagtgtgaaaatgtcaccataGAGCTTCTGCTACATTAATTGAAGAACCAAGGGGAGCTGAAAATCTCAGCTGGTTTtgaacatattagaacaagtgttACTGCATCATTATATATAAGAGCCAATCCTGTTCAAATATGCAACTACAGGCCATGCAACACTGGTTTACCAGAGAAGGAGGAGTCGAAAAGTACACAAATGGGGTTTTCATGTTCCTAAATTAGATTTTCTTGATAAGGTTAAACTTGTATACATGCTTGGAACTGTCATGTCAAGTAATTTATTACTcaatatacagacaggtgacaaagtaaaggaaaaaacaacttAGAGTGTCTAAGTAAGGTGTTGGCCACCGTGAGCTGCCAGGTCCTCTGCAAGTCTCTGGACCTGTACTgaagggatgaacaccattcttccaaaacatctaggtgttttgatgatagtggtggagAGCACAGTCTAAACGTCACTCCacaatctcccataggtgttcaaccgggttgagatctggtgactgcgaaggccatagcatatgatttacatcattttcatactcaaaccattcagtgagccctcgtgccTTGTGAATagtggcattgtcatgttggaggAGACCACTCACATCAAGAGAGAAATGTTTCCTCATAGGATAAATGTGATCAGGCAGAATAAGTTTGTAGTGACTTGTAGTGACCCCTcttaaggggacaagtggacacataccatgccagcaaaatataacaaaaagtAACAAGTGTTTAATCCTTTAACTTATCACCTGTctgtagaaataaattataaatttattaaattttgaatgactttatatacattttgtattaacatattattatatgttcACCACATTACTTACTACAGTTAAGTGTAATTATTATGCACATTTAGATAACATCATCTGTAGTGTTATAGCAATACTCAAATGTTTCACTGCCAGAAGCGGACAGCATGGCTCAGTGCAGCTCCACACTAGGTGCTAATAGATTTCCTGTAATGATTGAACCTCAAGCTGCTCCACCAAAAGCACACCTTTTCAACTGTTACCCTTGAATAAGGCAAGGTTTGTTCTATTTGCAATAAAAGTAACCAGTTtgacatattttatataaaatatactgtgATGTGACTTTGACCCCCATGAATCAGGTCAGTATAAAAGAGCATGCCTTTTTAACACAATGAATGTTCCATGAAGCTTAAATAAGGACACATTCATATTAAATCAAAGAATCATATCATTAaatcaaaaaaacataaaatgatgCTCCAaagaaaccattttttaaaaaatataataaaaagagGCCATACTTAAACTCTGCAGTTCACTAGAGACcaatcaatattttaaaagcCTTTAATGTAGGCCCCATTAAGGTTCCTACATCTCACTTTGGACAAACTGTTATCAGCGATAACACTAAGGCCAACAGTGTCTGGCCTGTGCAAGAACCACAGCCAATGGTGATACTGATCTGATTTGTGTCTGGGAATGTCAGATAGAGGTGACTGGTGATCCAGATGGACTTTTCTCCTTTAGGTCAATGTCCAGATCAGTGTTGACCCGTGCCAACTCTACGACCTGACGTCGAGGTGTAGGGGGAGGGAGGGTGGGGACTGGAGAATGTCTGCATACCTCTGGCTGGATCTTGTCTCTCGCTGGAGAACTTTACTCAGCAGAGGCTTCAGAAGCCCAATGGTGAGCTGACTCCCGTGCAAATGTCCCTGGAACGGGCCAGAGGATTGTGCAGTGGGGGGCAAATTTTTGAGAACTAGGTTTAAAATTCCAGTAACAGTCATGTCTTCCGGACAAAGGGCCCATAGTAAGTCCAGATAGGGGTCCAGGTCTCTGTGCTGGGACACCTCACTCAGCAGTGTGGTGAAAATCTCCTTATTGAGAAGAGGGCTTTGACGGCAGTGCTTCTCGGCCACCTGGGTGACACGGTCCCACTGGCCTTGTCCTATGAGCATGCGGAGGGCCTGCATTACTGCATTAGGCCGCTGGCTACACAACAGCAGCTCCACCTCAAGGTCCTGGCAGACACTTTTACCTGGAAGGACAGCAAGAGCCCGTTTATATAAAGGTAAGCTCTCAGAGTTCTCCTTTCCAAAACTCCAGGAAGACGTAGATGAAGAGCTGGACTGCTGCTGTGCCAGCTCCAGAAACATGGGAAGCCAGCTGGGCTGGAATTTAAACATGGACTGACACAGCAACTCGAAGACTGGCAATGTACCATTGGCTGGGGTGTTTTTCTGCTGACTATTGTAGTAGTTAGGTGTCGTTTGGACAGTGCTTAGAACAATCTTCCATAATTCAGCAGGCGCTTTGGTAGATAATGAGCCCTCGCCGTTGCATCTGAGTTGGAGCACAGCTTGTACGGCTTGCCAGGTCTCGGTAGGGAATAGTTGGAACATACTATTCAGATATTGTAGGTTTTCCCTATCGATTTCTGAGCTGAGTAGTCTGCAGAGTTCCTGCTGAACTAGAGTCTCACAATGACTCTGTAGATCTTTTTCTGAGGCTTTCACCACTGATGCCTTAATGTCCTCCAGGGCAATGAGACTCTTCAGCTCAGAGTTAAGACAGCTTAACAGTTTCTCATGTCCTGAAGAATCCTTCCCTGCCATTTTCATCTTACTGTTGCCCAAGTATTCCCTGATGATGTTTGCCAGTGTGATAGGTGCCTGAAACATCCCGCCCTTCTTGAGTTTTTCGGCTGTTAGCTGTGTGGTGCTAAGACTTCTCTGTTGGTAATATTTACATGCCTCCTCAAACACAGTTTCAATCAAGACAGCACCTAAGTTAATATTCTCTAAATGGGCACCTGCTGGCTTGGATTTTGCTTCAATCTCCTTCTGGATTACCATATATAACCCAGCCTCTGAGAACATCTGTGGGGAATAAGTCTCCAAACAGTTCACAAACAGGAGGCCCTCCCTTTTCAAAGGGATCCTCTCCAACTCCACGCCACACTTAATGTCAATTAGGTACATCATTCTGCCCACTGCTAGTGCAATGACGTCATCATACATGTTCAGGCTGTTTTGAGTCCCACATGTAGTGAGGCAGTTGTCAGGCAGTTTATAAATCTGCCGTAGACTTCCATCTCTTTGCATAATGCAAACCCACCCAGAGCTGAGGAGGAGCAGGATATCCCCATGTCCAGCAGGACTAAAACTATAGATGTCAGGCGGGGTAACGGTGGACAGATAGCCGATGCAGTCCGTGACCAATCTCTTGAAGTCAAACTGTTTGTTTGCTGTGGATTTTCTGATGAAAAGAGTTCCATCACTGGCACTGTGGACCTTATAGACATCGTTCTGAGGGGACCATGATAAAAACACTTTTGTAACACTCGTGCAAGAATCTTCCTTTATATTTGGTAACAAATATACAATATCTCCGGTACTGATAACTGAATAATGAGGATTATTGTGCAGTGCAGTTTTGACTCCACCCAAGGAGATACCCCGTTCATCTACATCAAAAGTCCTTTTACAGATGCAGTATGTGAAGTTACTGCGATCCACACTGGACACTGAAGAGCTCTCTGAGGCTGGTCTCTCCTCACACCATATGATGAAATTCTCACTGATGCAAACTGAAACGATTTTGGCTCTGGAGCTGTTACAGAGATCCACAGTCTGAAGCAAGCTCCATCCAGATTTCCGCTCGGAGAATTTCCATAATTCAGCTTTACCATTCTCAAATATGATTCCAAGCAGAAGGGCTCCATCCTCTGAGTCGTTTTGTTTGAAATAAAGTAGGTCAACTATCGAGACATTCCGTGTCAGCACTAAATCCAGATGCTCCTGGCACTGCACTAGGTGGGCTCTCTGATATCTGTCATGGGTCATGAGACCAGTTCTCGGAGCTTGCTGGATAATGTGGATGTGTCGCCCATCTGGACTAATGCGGATATTAGACAAGCAGCTTTTTGAAGAATTTTTCGCATAAGACTGCTTCAAAAAGTCTTTTAGCTCTTTACCTCTTGTGAAATCGCCGAAATCTGTCGCCTGTTCCAAAACATGTCGTGTCATATTAGCTGAAGGTGAGGAAATCCCGGACTAGGAAGCGAAATAGAGCAGTTAGTCGCTGACAGTTCCTTCACTTTAAGGCACTTTGACCATACAGCGGCGCAGCATATCCATCTTCCGTCGCTTCATCGCATCCATTATAGTTAGCTGATGCCGAAGTGTTCAGAAATAATTATATTCCAAAATAATTATAATCCAAACAAGCCAGACTTTTCCTATGCTTAACAACTCGACCCTTTCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55220 lncRNA upstream 64632 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 67824 14965906 ~ 15011989 (+) False G46638
TU55130 lncRNA upstream 105925 14972590 ~ 14973888 (+) False borcs7
TU55126 lncRNA upstream 112698 14965906 ~ 14967115 (+) True G46638
TU54849 lncRNA upstream 453340 14624473 ~ 14626473 (+) False LOC113541837
TU55373 lncRNA downstream 334719 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 388891 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 626827 15711137 ~ 15715524 (+) True G47043
TU55651 lncRNA downstream 809271 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 948994 16033304 ~ 16035339 (+) True G47084
XM_026940574.2 mRNA upstream 1756 15059462 ~ 15078057 (+) True prom2
XM_026940583.2 mRNA upstream 1756 15065121 ~ 15078057 (+) False prom2
XM_026941657.2 mRNA upstream 21034 15034063 ~ 15058779 (+) False ldb1a
XM_026941697.2 mRNA upstream 21034 15034064 ~ 15058779 (+) False ldb1a
XM_026941635.2 mRNA upstream 21034 15034064 ~ 15058779 (+) False ldb1a
XM_026942083.2 mRNA downstream 886 15085196 ~ 15090877 (+) False nsmce4a
XM_026942091.2 mRNA downstream 894 15085204 ~ 15090877 (+) False nsmce4a
XM_034302969.1 mRNA downstream 1002 15085312 ~ 15090877 (+) False nsmce4a
XM_026942098.2 mRNA downstream 1046 15085356 ~ 15090877 (+) True nsmce4a
XM_026940316.2 mRNA downstream 7520 15091830 ~ 15156743 (+) True tacc2
XR_004577898.1 other upstream 712367 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 796645 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1578767 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2046565 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2079851 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 709118 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 986404 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 986449 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1150225 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4257040 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU112743 True 2009 lncRNA 0.36 2 CI01000016 9789311 ~ 9793229 (-)
bowfin (Amia calva) TU112743 True 5811 lncRNA 0.41 2 CM030131.1 4901022 ~ 4910792 (+)