Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU55373 |
| length | 614 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G46833 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 15419029 ~ 15419642 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU55286 | lncRNA | upstream | 334719 | 15079813 ~ 15084310 (+) | True | G46765 |
| TU55287 | lncRNA | upstream | 334719 | 15081653 ~ 15084310 (+) | False | G46765 |
| TU55220 | lncRNA | upstream | 403848 | 15014123 ~ 15015181 (+) | True | G46713 |
| TU55127 | lncRNA | upstream | 407040 | 14965906 ~ 15011989 (+) | False | G46638 |
| TU55130 | lncRNA | upstream | 445141 | 14972590 ~ 14973888 (+) | False | borcs7 |
| TU55393 | lncRNA | downstream | 53559 | 15473201 ~ 15473870 (+) | True | G46849 |
| TU55615 | lncRNA | downstream | 291495 | 15711137 ~ 15715524 (+) | True | G47043 |
| TU55651 | lncRNA | downstream | 473939 | 15893581 ~ 15896079 (+) | True | G47071 |
| TU55664 | lncRNA | downstream | 613662 | 16033304 ~ 16035339 (+) | True | G47084 |
| TU55821 | lncRNA | downstream | 684194 | 16103836 ~ 16104050 (+) | True | G47224 |
| XM_026942885.2 | mRNA | upstream | 5639 | 15388496 ~ 15413390 (+) | True | ogdhl |
| XM_026940301.2 | mRNA | upstream | 32635 | 15355817 ~ 15386394 (+) | True | parga |
| XM_034302786.1 | mRNA | upstream | 64616 | 15325232 ~ 15354413 (+) | True | myofl |
| XM_034302787.1 | mRNA | upstream | 64824 | 15325232 ~ 15354205 (+) | False | myofl |
| XM_034302788.1 | mRNA | upstream | 66781 | 15325232 ~ 15352248 (+) | False | myofl |
| XM_026943684.2 | mRNA | downstream | 27781 | 15447423 ~ 15450880 (+) | True | lrit1a |
| XM_026942759.2 | mRNA | downstream | 60885 | 15480527 ~ 15487523 (+) | True | chst3a |
| XM_026933760.2 | mRNA | downstream | 170476 | 15590118 ~ 15625846 (+) | False | pax2a |
| XM_026933736.2 | mRNA | downstream | 177020 | 15596662 ~ 15625846 (+) | True | pax2a |
| XM_026933786.2 | mRNA | downstream | 177020 | 15596662 ~ 15625846 (+) | False | pax2a |
| XR_004577898.1 | other | upstream | 1051583 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003404567.2 | other | upstream | 1135861 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| TU54033 | other | upstream | 1917983 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 2385781 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 2419067 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU55629 | other | downstream | 373786 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 651072 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 651117 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55884 | other | downstream | 814893 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003403773.2 | other | downstream | 3921708 | 19341350 ~ 19356098 (+) | True | sfxn5a |
