Item | Value |
---|---|
RNA id | TU55393 |
length | 232 |
lncRNA type | inter_gene |
GC content | 0.43 |
exon number | 2 |
gene id | G46849 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047597.1 |
NCBI id | CM018543.1 |
chromosome length | 33776708 |
location | 15473201 ~ 15473870 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU55373 | lncRNA | upstream | 53559 | 15419029 ~ 15419642 (+) | True | G46833 |
TU55286 | lncRNA | upstream | 388891 | 15079813 ~ 15084310 (+) | True | G46765 |
TU55287 | lncRNA | upstream | 388891 | 15081653 ~ 15084310 (+) | False | G46765 |
TU55220 | lncRNA | upstream | 458020 | 15014123 ~ 15015181 (+) | True | G46713 |
TU55127 | lncRNA | upstream | 461212 | 14965906 ~ 15011989 (+) | False | G46638 |
TU55615 | lncRNA | downstream | 237267 | 15711137 ~ 15715524 (+) | True | G47043 |
TU55651 | lncRNA | downstream | 419711 | 15893581 ~ 15896079 (+) | True | G47071 |
TU55664 | lncRNA | downstream | 559434 | 16033304 ~ 16035339 (+) | True | G47084 |
TU55821 | lncRNA | downstream | 629966 | 16103836 ~ 16104050 (+) | True | G47224 |
TU55827 | lncRNA | downstream | 650796 | 16124666 ~ 16134002 (+) | True | cxcl12a |
XM_026943684.2 | mRNA | upstream | 22321 | 15447423 ~ 15450880 (+) | True | lrit1a |
XM_026942885.2 | mRNA | upstream | 59811 | 15388496 ~ 15413390 (+) | True | ogdhl |
XM_026940301.2 | mRNA | upstream | 86807 | 15355817 ~ 15386394 (+) | True | parga |
XM_034302786.1 | mRNA | upstream | 118788 | 15325232 ~ 15354413 (+) | True | myofl |
XM_026942759.2 | mRNA | downstream | 6657 | 15480527 ~ 15487523 (+) | True | chst3a |
XM_026933760.2 | mRNA | downstream | 116248 | 15590118 ~ 15625846 (+) | False | pax2a |
XM_026933736.2 | mRNA | downstream | 122792 | 15596662 ~ 15625846 (+) | True | pax2a |
XM_026933786.2 | mRNA | downstream | 122792 | 15596662 ~ 15625846 (+) | False | pax2a |
XM_026933832.2 | mRNA | downstream | 122792 | 15596662 ~ 15625846 (+) | False | pax2a |
XR_004577898.1 | other | upstream | 1105755 | 14361367 ~ 14367446 (+) | False | cgas |
XR_003404567.2 | other | upstream | 1190033 | 14213402 ~ 14283168 (+) | False | slc24a3 |
TU54033 | other | upstream | 1972155 | 13498092 ~ 13501046 (+) | False | pcbd1 |
TU53738 | other | upstream | 2439953 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
XR_003404144.2 | other | upstream | 2473239 | 12982406 ~ 12999962 (+) | False | col17a1b |
TU55629 | other | downstream | 319558 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
XR_003404341.2 | other | downstream | 596844 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
TU55689 | other | downstream | 596889 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
TU55884 | other | downstream | 760665 | 16234535 ~ 16236648 (+) | False | lrrc18a |
XR_003403773.2 | other | downstream | 3867480 | 19341350 ~ 19356098 (+) | True | sfxn5a |