RNA id: TU55393



Basic Information


Item Value
RNA id TU55393
length 232
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G46849
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15473201 ~ 15473870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTAGCTCTCTTACCCTTTGGCGTGTCCTCTGAAAGACTGAACAATGCCAGATTACCGTTGTTACTCTGGGGCCCATTGTCATAGAAATATGGTGCGTAATCGCTCTGTGCTGTGACAAACTGGAAATGTACCAATAACATAAATGGTGAAAGTATCCTTTTATCAACATTCATCCTAAAAAACTGAAACAGTCCAAGGAAAGTGGCAGTGGTTGGATCTAAGCAGGTGTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55373 lncRNA upstream 53559 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 388891 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 388891 15081653 ~ 15084310 (+) False G46765
TU55220 lncRNA upstream 458020 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 461212 14965906 ~ 15011989 (+) False G46638
TU55615 lncRNA downstream 237267 15711137 ~ 15715524 (+) True G47043
TU55651 lncRNA downstream 419711 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 559434 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 629966 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 650796 16124666 ~ 16134002 (+) True cxcl12a
XM_026943684.2 mRNA upstream 22321 15447423 ~ 15450880 (+) True lrit1a
XM_026942885.2 mRNA upstream 59811 15388496 ~ 15413390 (+) True ogdhl
XM_026940301.2 mRNA upstream 86807 15355817 ~ 15386394 (+) True parga
XM_034302786.1 mRNA upstream 118788 15325232 ~ 15354413 (+) True myofl
XM_026942759.2 mRNA downstream 6657 15480527 ~ 15487523 (+) True chst3a
XM_026933760.2 mRNA downstream 116248 15590118 ~ 15625846 (+) False pax2a
XM_026933736.2 mRNA downstream 122792 15596662 ~ 15625846 (+) True pax2a
XM_026933786.2 mRNA downstream 122792 15596662 ~ 15625846 (+) False pax2a
XM_026933832.2 mRNA downstream 122792 15596662 ~ 15625846 (+) False pax2a
XR_004577898.1 other upstream 1105755 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1190033 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1972155 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2439953 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2473239 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 319558 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 596844 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 596889 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 760665 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3867480 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile