RNA id: XM_026940901.2


Basic Information

Item Value
RNA id XM_026940901.2
length 2944
RNA type mRNA
GC content 0.39
exon number 3
gene id eif4ebp2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15793406 ~ 15797204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATATCCTCCGGAGGCGCTCTGCTTCCTGCCTGGCGGAGGGAGGGACGGTGCTGACGGCTGGGAGGACGAGTCAAACGACAAGAAAGccttaaaaaaagacagaaaagaagggAAAGGGCTCGGGGTTCCACCTTCCGTCGGCATTACAACTTCAGCTCGACACAGCTCAGCGACCCAATCTAATGCAATGTCGTCCAGTCGTCAGCATAGCGAGAGCAGGGCCATTCCGACCAGGACGGTGCTGATCGACGACTCAACGCAGCTACCTCACGATTATTGCACCACTCCTGGAGGCACTTTATTTTCAACTACCCCGGGCGGCACCCGGATCATCTATGACCGTAAGTTCCTGTTAGACCGGCGTAATTCCCCTATAGCCCAGACTCCACCAGCACACCTGCCCGTCATCCCAGGAGTGACGAGCCAAAACATCctgaatgagaagaagaagaatgaagcTAATAACATCAATAACCATGATGGCAAACCAGGAACAGGTGAAGATGCTCAGTTTGAGATGGACATCTAAAGAAGAGGAACCAACGTGATGAGCGAATAATAATCTGGCGTCCATGTGCCAGTGGCTTGGCTTGTAGAAACCAATGTTGTGAGCCCTCTCCTTTAGCTCTCTCTAGCTGTTGATTGCTAAATAATCATGGGGATAGTCGACTCCTGTTGGCCCGGTGGGCTGCTGGAGCCCTGAAAGTTAACAAATGATTCTGATTTGTTTGATTAGGTTTCAGGGCTACCAACAGCTGCACATGCTTTGGCCACACAGCAAGGGAAATGTCTGTATGTAAGTGCCCAAATGTAACGATTAATGTAAACAGATTCACTTGCAAAAGAGCCACCAAGAGATTTCTTCATGGTGATTTAGTGCCGTTTTCACAGTAAGATAAATGATCCAAAATGCTCACTCAGTGTCTGTCATCCAGACATCTACTCATCAGTGCACCTTCTGTTACCTCCTTGTTGTTTCATCATTTTCAATAGTGTCAACCTTTTgagtatgttttattttatttttttttccagaaaaggTCTAGTAGCATTGACTAGCATCATGCATTTTGGTTCAGATTTAAAGAGCACCATTTTCATTCCAAGCCTTCAAATTGGGCACTGATACATAGCTGgatccactgttttttttttaaatgtgctatcaCAAACTTCAGATTCAGCATGGGGAAAATAGTTTTATAAAATGCCTAAACCATGGACCTTAAGTAAGAATTGCAGTTGGAATCCTGCCAAATTTCTaccccattttttccccccctctttATTTAAGGCAAAAAAtctgttggaaaaaaatattgatgACCAGGTGGTCTTCAGCTAGGGATACTGTGTTCCGTTTTTAGATTGATCCTGCTAGCAATATAATTTGCCCCTGCCTTTGATTTCTGAGTAAATCCTGATGATACTTGAAGCATTACCATCAGCTTTGTGGTCACTGAGtctaataaacaacaaatactGTAGTACAGGTGACCCAAAATTAGTTGTTGGTCAAAGGTAATGACAACATGCACAACTTTGGACCAGTGAATGgttaaatatgatttataaataGGTAATGAATAGAAAGAAGCCCCATTCCAGAGCTGGTCTCAAAATGCACTTATGTCATGTACAATACATCACTTTTAGCTCATATAGGTGAAATAACAGGGAAGTATATATATCATAATGCCAGTTGTGACGTCTACTTTCGCTTTCCGTTTGCTACTATATTTACAATCCTCCAACATCGGATCAAAGGTAGGAAAGCACTGAAGTGTTGTCAGGAAGTTTGCTCTGCTATTATGCATCACTGATAATGCAGTTAGGAAAATTCTAACAGCATTTGAGATGATGGATAGTTGCAGTGGCCTGACagttgatatatatttttttttgtttgtttgttttgatggaTCAAAAGCTTGAATGAAACATTTCCAATTCTCTTCTATGCATATTGTTTAAGCTCTTGTATATCTTATCCTAAGCTCAGATGTCAGCATtataaaaatgttgtatttcTGTGAagttttttgaatttttgtttcCTGCTTCCTCATGGGAAATGGAAAAGGCTTGAGATTTTCCACAGGAGAGCAAAGCAATTGTCTTTAAAGAGTGACTTAAAAGAGAATACAATTCATTCTCTCCTTTACACCTTTTGCGcttaaatcattcatttgtcTTTTAATATAAGTCTCTTTACCCATGCCTTACTTTATTAAGCGTCACAGCTGTGACTTAAACAAGTTTAGTTCCCTTTTTTCCAAAAtgctaacactttttttttttttttctttttccttttctgacaTTAGGATTAAGATGTTTATCagaattcatttatatttttggagACAGGTTAGTTATTCCTTTTCTCTGCTTTAGAGGTAAAAGGTTTGGGcttgcagcaatatattggttGAAATAAGATAAGTGATTGGGTCAACTTAAATTGGAACTGATTGGATTTAATGGCTCATGATTTTTGCTAAACATTGCAAACGCTGATTAATTCCcaaccattttatttttctaccaTTTGAATTTACAATTTAACtcacattttggatttaaatacCAATTGGCAAGATGAAATGTATGTTGAAGCAGCTGGTGGTGTATTTGCTGAATGTACTCTCGTAATGTATCGTGAGCTGTCAAATCCACAGTGTCTTTCAACCCCTTAACTGAAACTGTGTATTTTTACATACCGTACCCATTGGAATTCATAAATTGCCCATCAGAGACAGGTATACCTTTTGTAAGAGCCTTCCCAGATTAATTTACCAAATGGCATACAAAAAGTGGCACAAATGGTATTTTTTGTTCTGTAATTGAGACCCTGTAAAATTGAcgttaatttaaattaaattccaaTGCCAGTGGACACTATTACAGCAAAATCAATAAAAGTTCcttgaaaacaaaa

Function

GO:

id name namespace
GO:0045947 negative regulation of translational initiation biological_process
GO:0008190 eukaryotic initiation factor 4E binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55615 lncRNA upstream 77882 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 319536 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 373764 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 709096 15079813 ~ 15084310 (+) True G46765
TU55651 lncRNA downstream 96390 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 236113 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 306645 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 327475 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 395504 16192695 ~ 16203524 (+) True G47265
XM_026943827.2 mRNA upstream 19703 15746453 ~ 15773703 (+) True spock2
XM_026943836.2 mRNA upstream 19703 15746453 ~ 15773703 (+) False spock2
XM_026943305.2 mRNA upstream 62705 15722881 ~ 15730701 (+) True dnajb12a
XM_026933724.2 mRNA upstream 115957 15673435 ~ 15677449 (+) True cuedc2
XM_026933777.2 mRNA upstream 167560 15596662 ~ 15625846 (+) False pax2a
XM_026943092.2 mRNA downstream 2037 15799228 ~ 15812480 (+) False pald1b
XM_026943082.2 mRNA downstream 2038 15799229 ~ 15812480 (+) False pald1b
XM_026943075.2 mRNA downstream 3411 15800602 ~ 15812480 (+) False pald1b
XM_026943066.2 mRNA downstream 3412 15800603 ~ 15812772 (+) True pald1b
XM_026945125.2 mRNA downstream 23902 15821093 ~ 15827467 (+) True rps24
XR_004577898.1 other upstream 1425960 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1510238 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2292360 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2760158 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2793444 12982406 ~ 12999962 (+) False col17a1b
XR_003404341.2 other downstream 273523 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 273568 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 437344 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3544159 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3544159 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile