RNA id: TU55651


Basic Information

Item Value
RNA id TU55651
length 2377
lncRNA type intronic
GC content 0.40
exon number 2
gene id G47071
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15893581 ~ 15896079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGGGTGGATGTCGCCGGTACAagagtttttacattttgatgaTTGTAGGTGCTCTGTTGGACTTTGAAAAtggctctttttttatttcagtcaaGTGGCCATTTCAGCTCTATTACATTAAATGAAAGGCCACGGATTGTAATGCattgtaatgcattttattgaatCTTATTCTACTAATTCCTAGCAAATTAGCCTATATTTATCTATTAACTTTAACTTGTCCGCATTGATgacatgtttgttttgcagaGCCTTGCTGCTGTTTTGGTGCGGGTCGTGGCCGTGTGGCAAGCTGGGAGTTGTCACATGTGAGATGTAATAATAGACTCTGTTGTGCGATCCAAACAGCTTGCTCGCCTCTGTGACTCACTGTGGCTCGGCCTGAGGTCTGGACTTGCATCATCACCATAATCAGTGTCTACTCAGCTGTCGAGCTCGCCCTTGCTTTCTCATTcttcttatttctctttctctatctctatctctccgGCATTCAGCCTCATTTAGCAACCTGCAAAACAGCAACTATCTTTCCCCTCATCTCATTTGTGGACGTGGTTTACAATCAACTGAAAATGACACTTTGCAGGCTTTGGTGGTGAAACCTATTATTGTAATCCCTCAATGATTATTTTAGACATTCTAACAAATCAGAGTGTTTCAGTAGTCTAGTTTTTATGCACGGAATTGTATTTACCATTTGGGGCTACGCTGTAGTTCACCGCAGACAAGAAGCAGTTGGTTTAAACGTGCCAAGTGGGACCACTGTAATGTTTCTGACCTTTTGTTACCATTGACTGATGAGATATTGgttcaggggaaaaaatgagatATTTCCACCGCCCTCTGTGACAGGCGTATAAATGAACGCATCAAGCAGCAGGATTCTCCAGACAGCACAGTCTTCTGTGCTACGAGCTAGCTGTCATCAGTGCTCATGGAGAATAAAGTAGGAAGCTGATTTACTAAGAAAATTTTTCTTTCCAAAAGGGTTTGTTTTCTCTCCTGTGGGGTTATGAAGAGTGAGTATGGCAATATCTATTGCTCAGCCTACACTTCATATAACAACTCTTTAGGTCTTTATGGTCTTAGACCATGTAATAAGGAGCTCTGACTGTGACCATCAGTCATCCTGTCCTCGATAAGACCTCTGACATGTGCCTAAAGTATTATGCATAACCAGGGCTGCTTGAACCAGCCTTCAGTGGGACATTGTTAAGGTTGAGAATGCAATCTTTGTTTATCACACAGTCACATGCTAGGTCTGGTCTCATCTGCCAAtagacatttattcatttaacagaTTTTCACACTTGCAGGATGgccttctgattggccagtgtcTCATGTCTTATTTATCGACAGCCTTAACAATCTGCAACCAAATCAGCATCTCTTACAAGCTCTGTGAAGTGTGCGTGTTGCAGTATGTCATATTATGACCGGATGACTAATGCAGTAAAATGAATCGTTAATCAAGACTGGGGAAGTTTGCTCAGCATGAAGCAAATTACCTGGATTAGCATAGCAAAACTCTGCATAATTTACCTTTACTGCTTGGCGCATCCTCCGGTAGAGAAGGGTCTGTTAATTACCGCTGTTGTAAACAGCCAGTCAGTGTGAAGGGGATAAATGGAACTGAGAGAACTGCAGAGAGAAAATGGAGTCATAATTTTATGAATTTGTCATGTTTGTTTTCATATCGGTGCTCGAATCTCAGGAACTCAGCTCCCTGACAGATAATTCAGCTGGGACATAAAGCATGTGATCCTTCGAAAAGTGTACTTCGGGGAAGGAATGATGAAATAGATGGGTCCTAGGGATAgttttgataataaaaaaaaaacattAAAGACCTACACAATCCACATTTCAACACAAAACCAACTAAAAGCTGTGTCATGTGGCCCTGTGGCAGTTCTCTGTTGTGACACTTCATTACCGTCACTCAGATCACAGCTCATTATTACATCTGAGTTAAACCAATGTGCTATATATATAGTGAGGTCCAAATGTCTGAGAATTTcgaaaaatttaaaacaaagaaaggaaatttTCAGTATATTGAATagtcaagattctgcactatttctaggttattatttaaatttgagcaaatttgtgatattgactgtgTTAGCACCTTTAAAAGGTTAGATTTTCTTTGAGACTTATCCCTTCTATTGAAACACATGTTCAGACAATAGTCTGATGGATTTggtctaaaatggatcataaggttttacacacacatggcaGATGGAGTGCAGgctgtcattaaaaaaagtgggacgtaccaaatactaagaaactttgaaattcatgtaaatatttcaaagaatcTACTTTTAACTGTTTTCAGGTTTTTgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55615 lncRNA upstream 178057 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 419711 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 473939 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 809271 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 809271 15081653 ~ 15084310 (+) False G46765
TU55664 lncRNA downstream 137225 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 207757 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 228587 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 296616 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 297337 16193416 ~ 16203524 (+) False G47265
XM_026945125.2 mRNA upstream 66114 15821093 ~ 15827467 (+) True rps24
XM_034302830.1 mRNA upstream 66114 15821093 ~ 15827467 (+) False rps24
XM_034302829.1 mRNA upstream 66173 15821093 ~ 15827408 (+) False rps24
XM_026943066.2 mRNA upstream 80809 15800603 ~ 15812772 (+) True pald1b
XM_026943092.2 mRNA upstream 81101 15799228 ~ 15812480 (+) False pald1b
XM_026935843.2 mRNA downstream 61850 15957929 ~ 15986353 (+) False zmiz1a
XM_026935850.2 mRNA downstream 62181 15958260 ~ 15986353 (+) False zmiz1a
XM_034302962.1 mRNA downstream 91360 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA downstream 91566 15987645 ~ 15991054 (+) False ppifa
XM_026940448.2 mRNA downstream 160305 16056384 ~ 16057258 (+) True si:ch73-6k14.2
TU55629 other upstream 96377 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1526135 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1610413 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2392535 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2860333 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404341.2 other downstream 174635 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 174680 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 338456 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3445271 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3445271 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile