RNA id: TU55664


Basic Information

Item Value
RNA id TU55664
length 2013
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G47084
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16033304 ~ 16035339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaagctgttaaaaaaagagtgaaaggattgagagaagaagagaaaatggaGGAGAGACAAGAGGACTTATAGGAAAAGGCACATCCTTCTCATTACATACAACGCACCCAGAAGATGACATGAAACAGGAATCATGGTCATACATAAAGAgtcaaacaaatcagaaaaaaacaactagaAAAGCTGTCTCTTACTTTAAGATACATTATGcttgtagctccagtacaaaactaaataaGCAAACCTTAGATACCCATCATCTCCTGACTGATCAAATGCATTCAGAGTAAGAAGAAaactgtgtttgtttaatttacCACAGAAATATTGCTCTGCAGTAGacattcaaaaagaaagaatctgGAAAAACAATAATATCTTCATGGTAGACACTGGAACCTAAAATGCTGAAACAATCAAACAGTTTGTATCACcaatattttgtcatatttgtgGGGTTTTAATGAAAGTCCAGTTACATTCATTTTGTCAACAAAGAATCATAAACAGTATAAAAGACAGATCATTTAACAGCTTTAgtctttatatataattaaataattgtttctttttttaggcATTTGTTAGTCACTTGTATGCTGGtgaccactgttttttttctgtactgagtaataataattattcatcatattattaataattatacacaGTGAAAGTCATTAACCCAATGGTTCTCAAACCAGGGTGCCAAGTTGTATCTCTACTTAGTCATTTTGTCAATTTAGTAAATCTATAAAGAGTGGTATGTGTTTAAAAACAGTAGAGGTTATGAAATGTTGTTAAGATTAAATATGTGCTAACCAATCACAAATCATAATTTCACAGACCGCTGGTGCTGACTCACTTGTAACTATCCACACTATCCATCCATAGTTAAGGTGGCCTTAAACTAAAAATGATTGAGAAGTGCTGCAttacacaacagaaaagtgctgGGACACAGATTTTACCCTAATTAACAACACTAAATTCTgagaatatgcaaattaggaacaCCACACAtttttatcctgttaaacagctgaagtAACAGAGGACAAGCAACACATGGCAGTTGTTCCACTAGCCTATAACTAAATCAGCTAAGCATACATGAAGGAAGTAACACAAAGTCACTGAGCAATGCTAGACCATAAATATCTGACAAACTGCCTTAGATGATGTAACATGCAGAAAGGTGTAAGTAAACATTGACTTTTTGGGCCCACTGCATAGATAGTTTCTATAAACTACTAGCACTCAGCTAGAGTTATAGAAGATAACTAGCATCAACTCTTAGAAGATCTAGTCAATAAAACCTATATTTTCAGTTACTGGTGATTAAAATAAAGGTTTGCCTGTTGACATCTGCTTGTTGCTGTGCTCTCTGTTTGCATGAGGTCTGAGACGTAAACCTTTTATTGAATCTCATGATCGTGGTAAAGGTGATGGTGATCCTACTCACCTGTTAGAATTTCCAATGAGATTTTCAGctctccagtgtttttcaaaaGAAGGTGACAAAACCATTACAGTAACTGTTTCTGCACATTGACAAATCCACTCAATCAAATTAACTGCTCAGAAATTATTTGATCATAAaccctgatttttttaaaatttttattttagtttcataATTTGtctaatatgtaaaaaaataataataataaaataaaaaaaaattcagatggATTGGTGTTTTTTGCTGCTATCGGACAAAGAATAGAAGGTTGAAAGTAATCTTGCCACTTAAAATGATAAACCTTCTTATTACAACTGATGTTCAAAGATAGAGGGATCTTTTTTTATCCTATCAGTATATCATTTGCATctctttaaaacaaacacagagttCACTCTTTACAGATTTGCAGTGACCTTCCTTGGTGATGGATTGTAGTGTGATATGAGACGGTTCGCTTCTCTCCAGCCAGTAAGTAAAGCGCCATGGACAGTGGAAAAGAAAGATTTGTGAGTGGCCTCTCCAGCAAACAGCACCTGTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55651 lncRNA upstream 137225 15893581 ~ 15896079 (+) True G47071
TU55615 lncRNA upstream 317780 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 559434 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 613662 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 948994 15079813 ~ 15084310 (+) True G46765
TU55821 lncRNA downstream 68497 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 89327 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 157356 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 158077 16193416 ~ 16203524 (+) False G47265
TU55957 lncRNA downstream 271129 16306468 ~ 16308843 (+) False arhgap22
XM_034302962.1 mRNA upstream 42250 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA upstream 42250 15987645 ~ 15991054 (+) False ppifa
XM_026935835.2 mRNA upstream 46951 15873317 ~ 15986353 (+) False zmiz1a
XM_026935804.2 mRNA upstream 46951 15873318 ~ 15986353 (+) True zmiz1a
XM_026935819.2 mRNA upstream 46951 15873318 ~ 15986353 (+) False zmiz1a
XM_026940448.2 mRNA downstream 21045 16056384 ~ 16057258 (+) True si:ch73-6k14.2
XM_026940430.2 mRNA downstream 37396 16072735 ~ 16075650 (+) False cxcl18a.1
XM_026934386.2 mRNA downstream 89288 16124627 ~ 16133719 (+) False cxcl12a
XM_026943279.2 mRNA downstream 127759 16163098 ~ 16181155 (+) True ercc6
XM_026943611.2 mRNA downstream 147670 16183009 ~ 16188933 (+) True drgx
TU55629 other upstream 236100 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1665858 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1750136 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2532258 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 3000056 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404341.2 other downstream 35375 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 35420 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 199196 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3306011 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3306011 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile