RNA id: XR_003404341.2


Basic Information

Item Value
RNA id XR_003404341.2
length 1765
RNA type misc_RNA
GC content 0.39
exon number 5
gene id cxcl18a.1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16070714 ~ 16075650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGGCAAACGCTGGGAAACCCCATTCACAGCGTTTAAAAACAGCGCAGAGCAAAACACTGGCAGTGTTACAATGAAGTCCTCACTACACACTCTCCCTGCTCTTCTGGCTCTGGGAATCTGCATCCACTTCACAGTTCAGAGTGCAGACAGTCAGTATGTTCCGAACCGCTGTGCCTGTCTAAAATCCAGGAACGGAGTCCAGGGACCATTTTCAGATTTCTCAGTCACCTTAAAAAGACCTGGCTGTATGAAAGACGAGATCATAGTGATACTGAAGGAGGACAACCGAAAGGTGTGTCTAAGCCCTCATGGACCTCAAGGCAAAAGACTATTGAAATGCTGGCACAGaaaacaggAGGAAGGCAACAATGGGAAGACATGCATGGGAAGACTCAGACCACGGCGACAGAGAAAGCAGCGTACCAAATCCAAGATGATCAAAAGATAATCAGTGCAGCACGATGGCAGCTAATGTCATCCTGAAAACACACTACTGAAGTACACTCCAAATACTTCAACAGCCTTCAACAGCTTCAGTAGCTTTTATGAGCTACATGTAGCAGTGTGATTGTTTTACAACCTTTATGTACAGGGCTGGCCCCAGTCGTAACTAGTTAAAATATAGCAAAGAGGTCATGTTTCAATCACATACTATCACTGCCAGTTTTAGTAGGATTTATGAGAGAAGTGGAATATATTTTGCACActgtttgtacatttttttaaatctaatttttgtatgtatatagattttttatattaaattaaaaaaaaaaaaaaacaacaaacaagtAAAAGAGCCACGTTTCATTTTTCTAACTTCATTATTATTGCATGCATATCACAATAAATAGTCAACAGTGACTGTGGACctggttataatgttataatctTCAAGTCAGAAAGCTTAGACTTTAACCATCGtttgttaattcattcatttattaatctccagttacagctttatcagtGCACCTGGATGGGACTCTAGTCCATTGCAGACCATCACTCACATCTTCACACATACCGGATATTTGCAGTAATCAATCTACCTATTGACATGATTTTGGGAAGACAAACAAttagaaacccacacagacaggaagaaaacatgcaaaaaaactgCTTATACATTAACCAGACGCTGTCTCTACAGTTCTATTTTCCATGACATAGTAATTTTGCAATAATTTTACTGCATTTGTTATCGCTGCCTGTTGTTTTGAAAAGTGAcatgaaaaaaattcttttatatCTAATTGCAGGTGACACACcaagatatactgtatatagcagaGTATAAAACTGATTTAGTTACTTTAAAGTGAATCCTCTTTATTCTTGCCGCTTCTGTTTTGGCCAGACAATGACGCCCTTCTCAAGAATGACTGCCTCTGATGGGTCAATATTTAACAAGCTAACAGTGAATTCATGTTTAAAGATCTCAAGAGCTTTTAGCGAATACTAGAAATCATGTGACATAGTTCTAAATATGGGCAGGCAGAAAGAAAAGGGGGTATGGCGAAGAGAGGCATACCTCTTCCAgcaaacacatgcacagattCCTTTCACTGCAACTGCAGCTAACATGGCCTTCAGGAGTGTGCAAGGGACTTTAACCCCACTGCTACTTATCTTTTGCTTAAACATCCTCACAGATGAGAAGACAGAAGCAGTAAACATTCGGGAGAAATGTTTGTGCATCAGAGAGACTGATACTGTATTATGGAGACGCATGATGGACTTCAACGTGATTGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55664 lncRNA upstream 35375 16033304 ~ 16035339 (+) True G47084
TU55651 lncRNA upstream 174635 15893581 ~ 15896079 (+) True G47071
TU55615 lncRNA upstream 355190 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 596844 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 651072 15419029 ~ 15419642 (+) True G46833
TU55821 lncRNA downstream 30769 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 51599 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 119628 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 120349 16193416 ~ 16203524 (+) False G47265
TU55957 lncRNA downstream 233401 16306468 ~ 16308843 (+) False arhgap22
XM_026940448.2 mRNA upstream 13456 16056384 ~ 16057258 (+) True si:ch73-6k14.2
XM_034302962.1 mRNA upstream 79660 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA upstream 79660 15987645 ~ 15991054 (+) False ppifa
XM_026935835.2 mRNA upstream 84361 15873317 ~ 15986353 (+) False zmiz1a
XM_026935804.2 mRNA upstream 84361 15873318 ~ 15986353 (+) True zmiz1a
XM_026934386.2 mRNA downstream 51560 16124627 ~ 16133719 (+) False cxcl12a
XM_026943279.2 mRNA downstream 90031 16163098 ~ 16181155 (+) True ercc6
XM_026943611.2 mRNA downstream 109942 16183009 ~ 16188933 (+) True drgx
XM_026932409.2 mRNA downstream 137493 16210560 ~ 16219838 (+) True vstm4a
XM_026935874.2 mRNA downstream 161447 16234514 ~ 16237542 (+) True lrrc18a
TU55629 other upstream 273510 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1703268 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1787546 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2569668 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 3037466 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU55884 other downstream 161468 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3268283 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3268283 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 3268283 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 3268283 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile