RNA id: TU55821


Basic Information

Item Value
RNA id TU55821
length 215
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G47224
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16103836 ~ 16104050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACCTTGCCTGCAGGTTGTGGAAATTAAGTTTAGGCGAAGCAAAGCACTTACATATTACAAAGCATTAACATACTGAGATAATATTTGCTTTAGGGTGTGGCCTCAGAAATCCTTGTTTCACTATGTTTTCATAGTAAGAGCAATGTTTTAACCATTAAATAAAGAAACGCCGCAGCCCTGAAAACCAGGAACAACAAAACCCTGAGGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55664 lncRNA upstream 68497 16033304 ~ 16035339 (+) True G47084
TU55651 lncRNA upstream 207757 15893581 ~ 15896079 (+) True G47071
TU55615 lncRNA upstream 388312 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 629966 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 684194 15419029 ~ 15419642 (+) True G46833
TU55827 lncRNA downstream 20616 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 88645 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 89366 16193416 ~ 16203524 (+) False G47265
TU55957 lncRNA downstream 202418 16306468 ~ 16308843 (+) False arhgap22
TU56057 lncRNA downstream 290955 16395005 ~ 16397038 (+) True G47406
XM_026940430.2 mRNA upstream 28186 16072735 ~ 16075650 (+) False cxcl18a.1
XM_026940448.2 mRNA upstream 46578 16056384 ~ 16057258 (+) True si:ch73-6k14.2
XM_034302962.1 mRNA upstream 112782 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA upstream 112782 15987645 ~ 15991054 (+) False ppifa
XM_026935827.2 mRNA upstream 117483 15873318 ~ 15986353 (+) False zmiz1a
XM_026934386.2 mRNA downstream 20577 16124627 ~ 16133719 (+) False cxcl12a
XM_026943279.2 mRNA downstream 59048 16163098 ~ 16181155 (+) True ercc6
XM_026943611.2 mRNA downstream 78959 16183009 ~ 16188933 (+) True drgx
XM_026932409.2 mRNA downstream 106510 16210560 ~ 16219838 (+) True vstm4a
XM_026935874.2 mRNA downstream 130464 16234514 ~ 16237542 (+) True lrrc18a
XR_003404341.2 other upstream 30769 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 31916 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 306632 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1736390 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1820668 14213402 ~ 14283168 (+) False slc24a3
TU55884 other downstream 130485 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3237300 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3237300 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 3237300 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 3237300 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile