RNA id: XM_026945426.2


Basic Information

Item Value
RNA id XM_026945426.2
length 2220
RNA type mRNA
GC content 0.51
exon number 10
gene id arhgap22
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16285122 ~ 16308898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acatgagagagagagagagagagagagagagggagagagagagagggatgctGGATGAGGTGCAACAGGGCGAGGCAGTGGAGGAGAGACTAGTGAAGATCCAAACATGTGGATGGGAGAACGCACTGCTGTTCAGCGATGAGCACTATGCTTAGCCCCAAGATCAGACAGACAAGGCGAGCCAGGTCTAAGAGCATGGTGATGGGGGAGCTGACACGGGCCTCGAGTCGGCCGTCCTCCCCTAGCCTCCAGGAGAAAGCACTGAAGGCTGGCTGGCTGAAGAAACAGCGCAGTATCATGAAGAACTGGCAGCTGCGCTGGTTTGTGCTGAGAACTGACCAACTTTACTTCTacaaagatgaagatgaaaccAAGCCACAGGGCTGCATCCCATTACACGGCTGCCAGGTCAACGAGCTAAGTGCCAATCCTGATGAGCCTGGACGGCATCTTTTTGAGATAGTTCCAGgTGGTACAGGAGAAAAGGACCGATCAGCTCCTAGCCATGATGCGTTCCTGCTTATGGCAAACTCCCAAAATGACATGGAGGACTGGGTCAAAGCCATCAGACGCGTCATTTGGGCTCCTTTTGGCGGAGGGATCTTTGGACAGCATCTGGAGGACACAGTGCAATATGAGCGTAAGTTTGGGACCCGACTGGCACCTCTGCTGGTGGAGCAGTGTGTTGACTTCATACGAGAACGAGGTCTGAAAGAGGAGGGCCTCTTCCGCATGCCAGGACAAGCAAACTTAGTCAAAGAGCTCCAGGATGCTTTTGACTGTGGTGACAAACCTCTGTTTGACAGTAATACTGATGTTCACACGGTGGCATCTCTGCTGAAGCTGTACCTCAGGGAGCTGCCTGAACCCGTCATCCCCTTCAACAAATATGAGGACTTCCTCACCTGTGCCCAGCTACTGCTCAAAGATGCGGAAGTGGGCCTCAGTGAGCTGGCAAAGCAGGTGAACACTCTTCCTCAAGCCAATTACAACCTGCTGAAGTACATTTGCAAATTCTTGGATGAAGTCCAGTCTCAcgcaaatgaaaataaaatgagtgTTCAGAACCTTGCAACAGTATTTGGACCAAATATTCTCAGAGCGAAAATGGAGGATCCTGTTTCAATGATGGAGGGAACCTCTCAGGTGCAGCACCTCATGACAGTGCTGATCAGCGAGCATGAGAGACTGTATGGAGGCATGGAGGTTGAGACGTCCTCAAAGCAGAGCAAGACACCTGCTCAGGGCCAGCGCGGCATGGCGGCTTGGGGTTCAGAGGAGGAAATACAGCACTGTCCCTCTTCTAGCCAGACCTCTAGCCTTCCTGACCACATGTGTAGCAGTGCCACATCTCTGGATATAAACATGGGCATGCCCAATAATGCAAAGCAGGCACCTCAGGGAAAAGCTGGGCTGGCGGTCAGCCCAAGCAAACAGGCCAAATCTCTCCCTTCATGGAAATACTCTTTTAAAAGCAACAGTACACGGGCTCAGCTGCCTAAGATCGGAGGCTCATCTGTGGACGTATCGAACAGTGGGAACTGGCTGATGAATGGCCTGTCATCTCTGAGAAGCCACCGGCGCACATCTTCGGGAGAACGTGTGGGCAAGGACTCAGTGCTGTCTCATCGCCTTTCTACCTACGACAACGTAACTGCATCCAGTGTGAGTGTGCCCAGTGTGGCCAGCTCTCCCTGGTCCACTTCCTCCTGTGAGATATCGGTAGTGAACTCGGTGAGCAGCGAGCCTTCTGCACTGAGCTCGGACAAGGACAAGTGTGTAGAGACGAGGGTGGAAGAGAAAGACATCACAGAAAGTAGTGAAGCACTGGAATTGTGTGTAAGCAGCATAGGATGCAGTGAGTATGGGAATGTGGATGATAATGTGGATGAATCAACAGACCTTGATGACAACTCACAAGCTCTTAACAGCATTATAACTGAACTGAAGGATGAgctgaagaaacaaaaaattaattatgaaatCCGAATACGGAGGCTGGAAGAGAACAGTGCATTGCTGACTCAGCAGGTTGACAGGTTAGAGGAGGAATTAGACCAGGAGAGGAAGAAGTACAGAATGTTGGAAATTAAACTGCGGAACTCAGAGCGAGCCCGTGAGGATGCAGAGAACCGGAACCGGCTACTGCAGAGCGAGATGGAGGAATTCTTCTCCACTTTAGGAGATCTAACAATGGGGACAAGGACAAACAAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55863 lncRNA upstream 83315 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA upstream 83315 16193416 ~ 16203524 (+) False G47265
TU55827 lncRNA upstream 152837 16124666 ~ 16134002 (+) True cxcl12a
TU55821 lncRNA upstream 182789 16103836 ~ 16104050 (+) True G47224
TU55664 lncRNA upstream 251500 16033304 ~ 16035339 (+) True G47084
TU56057 lncRNA downstream 86758 16395005 ~ 16397038 (+) True G47406
XR_004577907.1 lncRNA downstream 133815 16442062 ~ 16451765 (+) True LOC117596920
TU56095 lncRNA downstream 150998 16459245 ~ 16459911 (+) True G47431
TU56133 lncRNA downstream 157725 16465972 ~ 16467346 (+) False marveld1
XR_004577499.1 lncRNA downstream 184071 16492318 ~ 16531380 (+) True LOC117596359
XM_026941903.2 mRNA upstream 7249 16271297 ~ 16279590 (+) True si:ch211-223a10.1
XM_026935874.2 mRNA upstream 49297 16234514 ~ 16237542 (+) True lrrc18a
XM_026932409.2 mRNA upstream 67001 16210560 ~ 16219838 (+) True vstm4a
XM_026943611.2 mRNA upstream 97906 16183009 ~ 16188933 (+) True drgx
XM_026943279.2 mRNA upstream 105684 16163098 ~ 16181155 (+) True ercc6
XM_034301942.1 mRNA downstream 15306 16323553 ~ 16358384 (+) True ptpn20
XM_034301949.1 mRNA downstream 40365 16348612 ~ 16358384 (+) False ptpn20
XM_026933289.2 mRNA downstream 79744 16387991 ~ 16393038 (+) True gdf10a
XM_026938843.2 mRNA downstream 90308 16398555 ~ 16422200 (+) True antxr1d
XM_026942625.2 mRNA downstream 148171 16456418 ~ 16457819 (+) True mettl18
TU55884 other upstream 50191 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 213772 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 214919 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 489635 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1919393 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 3033103 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3033103 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 3033103 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 3033103 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 3033103 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile