Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU55985 |
| length | 433 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | G47359 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 16271270 ~ 16272531 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU55810 | lncRNA | downstream | 257926 | 16011570 ~ 16013344 (-) | True | G47213 |
| TU55753 | lncRNA | downstream | 524496 | 15744540 ~ 15746774 (-) | True | G47160 |
| TU55750 | lncRNA | downstream | 537191 | 15733833 ~ 15734079 (-) | True | G47158 |
| TU55717 | lncRNA | downstream | 573856 | 15697078 ~ 15697414 (-) | True | G47130 |
| XR_004577817.1 | lncRNA | downstream | 597812 | 15619605 ~ 15673458 (-) | True | LOC117596835 |
| TU56130 | lncRNA | upstream | 172165 | 16444696 ~ 16446304 (-) | False | zdhhc16a |
| TU56286 | lncRNA | upstream | 403519 | 16676050 ~ 16691599 (-) | True | G47599 |
| TU56444 | lncRNA | upstream | 493178 | 16765709 ~ 16767510 (-) | True | G47731 |
| TU56451 | lncRNA | upstream | 515988 | 16788519 ~ 16788729 (-) | True | G47735 |
| TU56621 | lncRNA | upstream | 736309 | 17008840 ~ 17009049 (-) | True | G47882 |
| XM_026935861.2 | mRNA | downstream | 3385 | 16222366 ~ 16267885 (-) | True | wdfy4 |
| XM_026944191.2 | mRNA | downstream | 65817 | 16193327 ~ 16205453 (-) | True | LOC113545059 |
| XM_026934355.2 | mRNA | downstream | 109073 | 16079950 ~ 16162197 (-) | False | tmem72 |
| XM_034302696.1 | mRNA | downstream | 164319 | 16079950 ~ 16106951 (-) | False | tmem72 |
| XM_034302695.1 | mRNA | downstream | 178288 | 16079950 ~ 16092982 (-) | True | tmem72 |
| XM_026939126.2 | mRNA | upstream | 36898 | 16309429 ~ 16320815 (-) | True | mapk8a |
| XM_026939133.2 | mRNA | upstream | 36898 | 16309429 ~ 16320815 (-) | False | mapk8a |
| XM_026939140.2 | mRNA | upstream | 39167 | 16311698 ~ 16320815 (-) | False | mapk8a |
| XM_026938880.2 | mRNA | upstream | 120552 | 16393083 ~ 16398065 (-) | True | prdm8 |
| XM_026943744.2 | mRNA | upstream | 151614 | 16424145 ~ 16442046 (-) | True | rrp12 |
| TU55523 | other | downstream | 854787 | 15413941 ~ 15416483 (-) | False | c3h10orf53 |
| TU55100 | other | downstream | 1486536 | 14779865 ~ 14784734 (-) | False | sdhaf4 |
| XR_004577668.1 | other | downstream | 2079027 | 14181891 ~ 14192243 (-) | True | ccdc85a |
| XR_004577863.1 | other | downstream | 3240074 | 13005486 ~ 13031196 (-) | False | slka |
| trnal-cag | other | downstream | 3536988 | 12734200 ~ 12734282 (-) | True | trnal-cag |
| XR_004577773.1 | other | upstream | 706600 | 16979131 ~ 16982729 (-) | False | morn4 |
| XR_004577771.1 | other | upstream | 706600 | 16979131 ~ 16982729 (-) | False | morn4 |
| XR_004577772.1 | other | upstream | 706600 | 16979131 ~ 16982729 (-) | False | morn4 |
| TU56907 | other | upstream | 1198656 | 17471187 ~ 17476061 (-) | True | cisd1 |
| XR_004577786.1 | other | upstream | 1289801 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
