Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU56951 |
| length | 777 |
| RNA type | TUCP |
| GC content | 0.53 |
| exon number | 2 |
| gene id | col13a1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 17578178 ~ 17661419 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU56927 | lncRNA | downstream | 153721 | 17500633 ~ 17503860 (-) | True | G48158 |
| XR_003404617.2 | lncRNA | downstream | 238174 | 17371442 ~ 17419407 (-) | True | LOC113545496 |
| XR_004577905.1 | lncRNA | downstream | 527968 | 17116954 ~ 17129613 (-) | True | LOC117596916 |
| TU56682 | lncRNA | downstream | 566998 | 17090382 ~ 17090583 (-) | True | G47940 |
| TU56621 | lncRNA | downstream | 648532 | 17008840 ~ 17009049 (-) | True | G47882 |
| TU57070 | lncRNA | upstream | 47537 | 17708921 ~ 17710376 (-) | True | G48248 |
| TU57076 | lncRNA | upstream | 54851 | 17716235 ~ 17727208 (-) | True | G48250 |
| TU57083 | lncRNA | upstream | 101410 | 17762794 ~ 17765665 (-) | True | G48254 |
| XR_004577884.1 | lncRNA | upstream | 138356 | 17799740 ~ 17801886 (-) | True | LOC117596895 |
| TU57104 | lncRNA | upstream | 155901 | 17817285 ~ 17818604 (-) | True | G48271 |
| XM_034302554.1 | mRNA | downstream | 83159 | 17561404 ~ 17574422 (-) | False | LOC113538666 |
| XM_026933916.2 | mRNA | downstream | 83159 | 17561693 ~ 17574422 (-) | False | LOC113538666 |
| XM_026933933.2 | mRNA | downstream | 83159 | 17561693 ~ 17574422 (-) | True | LOC113538666 |
| XM_026932098.2 | mRNA | downstream | 135567 | 17513181 ~ 17522014 (-) | True | hells |
| XM_026935656.2 | mRNA | downstream | 165906 | 17488029 ~ 17491675 (-) | True | galm |
| XM_034302626.1 | mRNA | upstream | 57639 | 17719023 ~ 17780528 (-) | True | gbf1 |
| XM_026933626.2 | mRNA | upstream | 57639 | 17719023 ~ 17780527 (-) | False | gbf1 |
| XM_026933619.2 | mRNA | upstream | 57639 | 17719023 ~ 17780527 (-) | False | gbf1 |
| XM_026933610.2 | mRNA | upstream | 57639 | 17719023 ~ 17780527 (-) | False | gbf1 |
| XM_026933595.2 | mRNA | upstream | 57639 | 17719023 ~ 17780527 (-) | False | gbf1 |
| XR_004577786.1 | other | downstream | 83159 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| XR_004577787.1 | other | downstream | 83159 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| TU56907 | other | downstream | 181520 | 17471187 ~ 17476061 (-) | True | cisd1 |
| XR_004577773.1 | other | downstream | 674852 | 16979131 ~ 16982729 (-) | False | morn4 |
| XR_004577771.1 | other | downstream | 674852 | 16979131 ~ 16982729 (-) | False | morn4 |
| TU57664 | other | upstream | 668984 | 18330368 ~ 18613401 (-) | True | lrmda |
| TU58169 | other | upstream | 1655103 | 19316487 ~ 19319733 (-) | True | G49195 |
| XR_004577815.1 | other | upstream | 1974454 | 19635838 ~ 19667661 (-) | False | atrn |
| TU58944 | other | upstream | 2696550 | 20357934 ~ 20369097 (-) | False | gng2 |
| TU58943 | other | upstream | 2696604 | 20357988 ~ 20369097 (-) | False | gng2 |
