RNA id: XM_034302669.1


Basic Information

Item Value
RNA id XM_034302669.1
length 4673
RNA type mRNA
GC content 0.46
exon number 42
gene id col13a1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17578178 ~ 17661419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGCGCGTGAGAGCGCAGTTTAACGGGGAGCGCAGGGCAGAGGCGCAGTTAAAGTGGAGTGTGCAGTGAACAGACTGCAGCTAAAGCGGATTGCAGGGAAGAGGCTCAAGTTTCACAACCCAGATCACTACAGCACTGAGACACTGGAGCTCAGAAGGACACACTCAGATGGCACGACTCATTCCCACGGCACAACGCTAGAGCCTTCCGACCCACCTGTACACATCATCAGGAACCATGCGCTTAACTCCTTTATaactcctttttctcctttAACGCGACACTAATTAGCCTGCTCTCTGAGTAAGTCTTGGACTAAAGTTGGGGCTGGTTTTTAATTCAAACCTCGCGCTGTTTGCCGGTTAATATCCCCTCTGATGAGTAGATTATAAGCTTGGTGAAGAAACTCGGAAAAAGCCAGGTGAGACGCTTCTGCCTAAAATGGAACAAGACACCAAAGTCTCTCGCGATTCTGCTGGAGAGAGGACTTGCGCCGAGCATCCGTGTAAAAGTGGCGCGTGGCCGAGGCGGATGGAGGTGTGTGGCGCGGTGGCGGTGTGTGTGGCGCTCTGCCTCTTCTCTctcggagtgtgtgtgctggtgtatCTGCGCACCTCGGAGCTACAGGCCAGGGTAAACAGCTTGGAGAAGCACAGAGAGCCTCAGCAGTCAGCCTGGATGGTTCTCGAGCAGGTGGAACCAGTGCTCTTAAACCGCCTGGATCAGATGCTGGAAGAGAAGTTAGCATCTCGTCTGCCCAAGACCAGAGAGACTCGGGATGTCTCCCACGCCTGTCTGTGTCCACCAGGTCCTCCTGGAGCTCCAGGGGAGCCAGGTCTATCTATCATTGGCCCACGAGGACCTCCTGGTCAGCCGGGCACTAGAGGATTTCCTGGCTTTCCGGGTCCCATCGGCTTGGATGGCAAGCctgggCAAAATGGTCAGAAAGGGGACATGGGCCCACCTGGTCCCAAAGGACTACCTgGTGAACCAGGTCCAAAAGGGGAAAAGggtgtgtgtggtgattaTACACATCGGAAACGGCGTATTGTCCACCCATGTGCTGGAGGACAGGCCACAATGTTGCCCATCACCGTGCGCAACATGCCCTCAATAAGCCCTCTAATTCTAAAGCGCCTCAAGCAGGGCGAGCCTGGAGCACAGGGACCACCGGGCCCTCCTGGCCCCCCAGGGCCTCCTGGTAGCCCAGGATTGACTGGTGCTAATGGGCCACCGGGAAAACCTGGAGAACCTGGAAAACCGGGAAAAGACCTGAGGatGTTGACAGGAATGAAGGGAGAACCAGGTGTACCAGGACAAAAGGGTGATCGTGGTGAGACAGGATTAACTGGACCTGAAGGCCCCAAGGGATCCAAAGGGGATCACGGACAGAAGGGAGAGGAGGGGAAGATGGGTCTTGcaggagagaaaggagagaagGGTGAGCGAGGGATGCCTGGAATGCCTGGAAAACAAGGAGTGAAGGGAGAACTTGGTTTTCCAGGGGCCCCTGGACTAAAGGGTCAGACAGGTATTCCCGGCATTCCTGGGAAGCGAGGCTATAAGGGTGAAAAAGGGGAGCTGAGCTCTTCAGGAGTTGGCATTAAAGGAGAACCAGGAGTGCCAGGACTGCCTGGATCCAAGGGTCAAAAAGGTGATCAAGGCATTAAGGGTGAAACAGGACCTGAGGGCCAACCTGGACCAAGAGGTCCTCCAGGTGCAACAGGAGAACCAGGAAAAATGTTAATCAACAACAATGAGAATGATATTCGTAATGTGCATCTAATGGGCCCACCTGGTCTACCAGGGCCTCCTGGGTTACCTGGTGCCAAGGGTGAAGTTGGACTGCCTGGGCCTCCTGGTCTTGATGGGGAAAAGGGTCCTCGGGGAAAAGTGGGAGAGCCTGGACCCGTTGGCCCACCTGGACCTGAAGGGCCGCGAGGAGAGGGAGGAGTTATGGGTTTCCCTGGACCTAAAGGGGATAAAGGAGACATGGGTCCCTCTGGATCACCTGGTTTAGATGGCCCTACTGGTGAAAAGGGGGCTACAGGGTCTCCTGGCCCCATTGGATTACCAGGCTCAATGGGTCAGAAAGGTGAAGCTGGAGAGAAGGGGGAAAATGGAGACCAGGTATATGGCCCACCAGGACCTCCAGGACCTGCAGGGCCAGTGGGACCTCCAGGATTGTCAGGGCCAAAGGGGGAGCCAGGTCTGGGcatgagaggagagaaaggatCACCTGGACAGAAAGGAGATAAAGGAGACAGGGGTCATCTTGGTCTACCAGGGGCTCATGGTTTAGACGGCAAGCCCGGTCCAGTGGGTCTTATAGGACCGCCTGGTATACCAGGACCAGCAGGACCAAAAGGAGAGAGGGGTGAGAAAGGAGAAATGGGAGTAGCAGGACCAATAGGGCCTCAAGGCATCCCTGGCTTAGTAGGACCACCAGGATTAAAAGGAAACCGGGGGGAGAGGGGCAAGAGAGGCAACAGGGGGGCCAAAGGGGATAAGGGAGACCAAGGAGCCCCAGGATTAGATGCCCCTTGTCCTTTGGGTGATGATGGTCTACCAGTACCAGGATGTTGGAATAAAGGTCAGAATCCTTTCCAGCTGGCTAAGAAGTAACAACAAATTGAGACCCACCTCTTCGTAGTGAGGTTTTATTCTAAGCTATATGAAGAAACTTGAAGAGGAGATCTTTGAGTTCAGACCTGCCATGgctgtttcatggacgttcgtGAGAGTTAAAGCACACATAGCGTTCCTTGGAGGCTCCACAGGGTGGCGTAGGTGAACACCCTTCTCTTTGATAGGACTACGTGAGCAATTTTCATCTTGACATTTTTCTGCTGAGGGCTTCACCAGAGAAACTGCCACAACAAAAACAGTGTATCATTGCTCCAGACTTTatacacatttctttctttttatcatGTTCACTATGTGAAAAATGAgcatttttgttattgtttattttttccttttttattatttgacacCAGTAACtgtgatttgagaattcagcgcAGCTCACTGAACATGTCATTTAGGTGATCATGTGTTTCCAGACTAACAAGCAAAAAAATCCTTTAATGATTCCTGATTTTCTTCTTTCACTGCCTTTTGTCAGCCTGAGAGTGACaggaagtgtacagagctatgcTGTATGTGCCTTCACTCCCAGAGGGACAGCTCAACTCATATCacgtgttttaaaaatgtatttatatttacaaactgCTTCAGAGTAAAGAAGACAGATATCCAGATATCACTACATGGCAAGAAAGACTTGCAGCTGTTTAAGACGTTTATAATTTGCTCTTCACATTTATAGatgttttcatgtaaatgtcattttcatgCCATTAGATAGGTTTGGAGATTTATATTCTTTCACTGAAGATGATAGatcacatttgttttattacaacACCCACAGCTGCGTGAGAAAGAGCTTTTCTAAATACACAGTGTGCTTGTGTGCTAGGCAGCTAATCTTTATTGATTGCTTTTTGAATAATATCTGACCTGTCTATGAAAcacctttaatttttaattcaagAAAGTGCTCTTTCAACAAAATGGTCACATAAAGTTGGTCACTTTTCTTATTGAGTGCTCCTTCATAGGTGttatatagtttttaaaaatttatttatataggcCAAAGTCCCATTTAGAGACTCCTGTTTGTCTGGTATGAATGTTAGTAAACCGAAAGGCACGTGTAAGCCATACACATAGTAACAGTATTGTTCAGTACATGATATCACACAAACTTTactaaaatgctttatttttcaccaGCAATGTGACCTGGTTTCATGTGTAGAAGCTTACAGTTGATGAGGTGTTTATTAACACTGCTGTTTATGTGGATAGCCTAATGCACAGAAGCATTCCTGATGTTTTACTGTATGATGTCATACTGATGTCATCCACATATAGTGCCTATTATCAACTATATTTCCTCGTATCTCCTAAATTTGCATCAGCTAAATGTTCTGTTATCATCAGTATGTTTGTAccaaaaaatctaattaatcCCAAATTGTCATAACAATTTTTTTCAAGATAAATTTGTTATTTCAGGATATCAAATTGGCATTAGAATGCatttaaagacaaaatacaGTGACTTCAATCAACATTAAGAATTTTTGGGCTGATTGAGTTGGAAATGTCCAAAAGCTGTGGATCATGAGGCCTGATGATTATCTTTGGCAATTTAAGCATGTAAATAGAACTATAACTTAATAATACTATAAAATACTCAAACAGTTTTGCAAATACCTACTTGTGACCTAACTTGCTTCAGATATATTCCTACCAAGAGTGtacaaattcatttttcattatcgTTTGCAGCTATTTAATCATTTGCAACTTTTTACTATCTtggtttaaacattttatgcaACAAGTGAAATCATCAACTACTTTACATTTACTATTTAACAAACTTACAGTTGAAGCCATCCATCTCCACTGAAGCATATGTTATGaagtattatattttatgctCATATCATAGAGGTATTTTTGACTGTTGATTTTGCACATTGAAAGCAGTGTGTTATAATTTACTTTGTCTCAGACAGCATTTGCAATGTTTGTACTGTGTCATTTATcttttaaacagaacatttCCCTTATGACATACCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56927 lncRNA downstream 74318 17500633 ~ 17503860 (-) True G48158
XR_003404617.2 lncRNA downstream 158771 17371442 ~ 17419407 (-) True LOC113545496
XR_004577905.1 lncRNA downstream 448565 17116954 ~ 17129613 (-) True LOC117596916
TU56682 lncRNA downstream 487595 17090382 ~ 17090583 (-) True G47940
TU56621 lncRNA downstream 569129 17008840 ~ 17009049 (-) True G47882
TU57070 lncRNA upstream 47502 17708921 ~ 17710376 (-) True G48248
TU57076 lncRNA upstream 54816 17716235 ~ 17727208 (-) True G48250
TU57083 lncRNA upstream 101375 17762794 ~ 17765665 (-) True G48254
XR_004577884.1 lncRNA upstream 138321 17799740 ~ 17801886 (-) True LOC117596895
TU57104 lncRNA upstream 155866 17817285 ~ 17818604 (-) True G48271
XM_034302554.1 mRNA downstream 3756 17561404 ~ 17574422 (-) False LOC113538666
XM_026933916.2 mRNA downstream 3756 17561693 ~ 17574422 (-) False LOC113538666
XM_026933933.2 mRNA downstream 3756 17561693 ~ 17574422 (-) True LOC113538666
XM_026932098.2 mRNA downstream 56164 17513181 ~ 17522014 (-) True hells
XM_026935656.2 mRNA downstream 86503 17488029 ~ 17491675 (-) True galm
XM_034302626.1 mRNA upstream 57604 17719023 ~ 17780528 (-) True gbf1
XM_026933626.2 mRNA upstream 57604 17719023 ~ 17780527 (-) False gbf1
XM_026933619.2 mRNA upstream 57604 17719023 ~ 17780527 (-) False gbf1
XM_026933610.2 mRNA upstream 57604 17719023 ~ 17780527 (-) False gbf1
XM_026933595.2 mRNA upstream 57604 17719023 ~ 17780527 (-) False gbf1
XR_004577786.1 other downstream 3756 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 3756 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 102117 17471187 ~ 17476061 (-) True cisd1
XR_004577771.1 other downstream 595449 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 668949 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1655068 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1974419 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2696515 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2696569 20357988 ~ 20369097 (-) False gng2

Expression Profile