RNA id: TU57070


Basic Information

Item Value
RNA id TU57070
length 1350
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G48248
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17708921 ~ 17710376 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCAGGTACTCAATGACGGCTGCCATGTAGACAGGAGCGCCCATACCGATGCGGTATTTATGAGTGCCTGTGCGTAAGTACCTCATCATCCTCCCTACAGGAAAGATAACGCCAGCCCGGGCCGAGCGTGACAGCTTGGTggtcttcttttttcctcctctggctgacatgctTTTTTTTGGTTCACAGTGTCACTGGATGATCACCTACTTGAAATACAGTAACAGTAAGTCAATGGATGAGTAAAATCCTGAAATCAATATATAACTACAATCTTTTTATTATAAGGCAATATTAAGTTTCAGAGCACAAGTTATGAATTTCCTATTacagggaagaagaaaaaaaggatgagaGTATGGCCATGATTTTACAAGGGAATACTAACCAGACATCCCTCAAAACATACATTTGTATTTTCACTAAAGAAATGACAGATGCTGCACTGAGTAGCAGGAGCTCAGCACCAGTACATCACCTGTCAGCTATAGCCTTACAGCCAATACATAATTCAGTGATCAtctccacactgtacacatatgggctttttttttcatttaccatACCAGCTCAGCAGTCCtgcatgaaataaaaacatatgaTCGAATCTGCTGGATAATGTAGTGCACCGAGTGAAAGCAGCACCGAGCTGTGCAGTACCGTTAATGCGCGAGCGAATAACAGCCATTGATCAGCTACCGCTGCTGGCTGAAGACACACAGCAGCTTAAAGGAAGCCTGCCTCTTTACACATGCCAAACACATATAAACGCGCTGAGATTTATGTGATCCTCTTCAATtgaaaaaagacaggaaaaaaaccAGGAGAGATAAAACCGCGGctgatgcagagagagagagagagagagagagagagagagagggagaaaggcgCCTCCTTGCTTCCTCGCGCGCAGCCGGGTCGAGCTGCAGTCGCTACGTGGGCGCCATGGAGGAGCACAGCTCCAGCCTGCGCACATACCCGCGCGCGCAGCACAAAGGCCTCGCTTATCAACCGCAGCGCTTTACATGGCAAACAACACTGTCCGCTATCGGACTGATCAAAGCGACAGGCTGGAGAGAGGCCACAGCGTTTCGTTTTAAAGCCGCTCCGCCCACGAACTAACCCCCATTTTGTTTCGCAGCCGCCGTGTACAGTAGCGTTAGGCTGAGGCTAATGTGCACACAGGAAAGGGGAACTAGTCCCTCCATCGCAGCCCTGTTCAACACCCTGGCGTTATTCATGCCTGCAATTTACCTGTTGTCTCCTACTTAACGCGACATATACAAGACAGATATTTCGTTTGACGCTCCCACAAGCAATTCTTGCTCTTATCCGTGTTCTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57004 lncRNA downstream 46217 17649131 ~ 17662704 (-) True G48195
TU56927 lncRNA downstream 205061 17500633 ~ 17503860 (-) True G48158
XR_003404617.2 lncRNA downstream 289514 17371442 ~ 17419407 (-) True LOC113545496
XR_004577905.1 lncRNA downstream 579308 17116954 ~ 17129613 (-) True LOC117596916
TU56682 lncRNA downstream 618338 17090382 ~ 17090583 (-) True G47940
TU57076 lncRNA upstream 5859 17716235 ~ 17727208 (-) True G48250
TU57083 lncRNA upstream 52418 17762794 ~ 17765665 (-) True G48254
XR_004577884.1 lncRNA upstream 89364 17799740 ~ 17801886 (-) True LOC117596895
TU57104 lncRNA upstream 106909 17817285 ~ 17818604 (-) True G48271
TU57216 lncRNA upstream 277046 17987422 ~ 17987631 (-) True G48368
XM_034302673.1 mRNA downstream 47502 17578178 ~ 17661419 (-) False col13a1
XM_034302669.1 mRNA downstream 47502 17578178 ~ 17661419 (-) False col13a1
XM_034302664.1 mRNA downstream 47502 17578178 ~ 17661419 (-) False col13a1
XM_034302659.1 mRNA downstream 47502 17578178 ~ 17661419 (-) False col13a1
XM_034302672.1 mRNA downstream 47502 17578178 ~ 17661419 (-) False col13a1
XM_034302626.1 mRNA upstream 8647 17719023 ~ 17780528 (-) True gbf1
XM_026933626.2 mRNA upstream 8647 17719023 ~ 17780527 (-) False gbf1
XM_026933619.2 mRNA upstream 8647 17719023 ~ 17780527 (-) False gbf1
XM_026933610.2 mRNA upstream 8647 17719023 ~ 17780527 (-) False gbf1
XM_026933595.2 mRNA upstream 8647 17719023 ~ 17780527 (-) False gbf1
TU56951 other downstream 47537 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 134499 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 134499 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 232860 17471187 ~ 17476061 (-) True cisd1
XR_004577771.1 other downstream 726192 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 619992 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1606111 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1925462 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2647558 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2647612 20357988 ~ 20369097 (-) False gng2

Expression Profile