RNA id: TU57083


Basic Information

Item Value
RNA id TU57083
length 2813
lncRNA type intronic
GC content 0.41
exon number 2
gene id G48254
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17762794 ~ 17765665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTTTGCTTTTCTCTTCCCCCACCTTTATTCCCTTGCCCATTTATAACACTGGGAAAATTTACAAGCCACCCCAATTGACTAGAAACACCTGAACCTTATGGCTGATTAGGATGTAATTGAACTGTAGAGCGCAGCTCGGGTGATGCTTTCATCACTGacctttattttgaattatcTCCTGTCCTCTGAACAAAGGACAGAGCAGAGACCGCTTAGCAAGGTCCTCAGCTTGATCAAATTAGTTGGCTCGCCTTTTATCTGTGCTTTTCTTATTCAGAGCACAGTGTATGCCCTCTGACGCTAGTGAACAGCTGACTACTACTAGCCTCAGTGTGTATGAAGTACTGACTCTCGATTCCATGCAAGAAAATTAAGTTTGCTTGGCAGTTAATTTGTTTTAAGTACGAGTATAAGCCCATGTTGTACCCACCTTTTATCTTAAATTATGATGGTAATAAAACAAGATTAGAACTGTCCGCTGTCTTAGAATCTCTGCGGTATAGTCTGTGATcttaggtctctctctctctctctttctttttcggTCTCTGCCAGTGTCTCGCATTCTGCTGTGAAGCCCAAGGTCAAGTGCAAGCCGTCTTAGATTCACAGCTGTGCCTAAGTGCCAGTGTCCCAATGTGGCCTTCACTCAGTATGTGGGTATATCCTGCACTCTGGAGGCCTCATGCTGCTCATTTGCCATTTGATATCTGCACATATATCTTTCCCAAATGAACAGCAAGAATGCAATTTGGCAGACACAGTGTAAGAAGAAGAGCCATAACTCAAATCAGGCAACCGCATATGCAAATATGTTTACTCATGGTGGCATATGCTGGTGTGGAATGCCCTTGTGTGAATCTTTTGAAGAGGTCGGTAATTTATGTAACGTGATGGAGTTATAAATTGTGAATGCTCATTccatgtatgtatgttttttttttttttatactctcTGCTATGATTAGGATTTGAGGTCCCTTTTTTAAAAGTATCATTGTTAATGCTAGAGAGACGAGATAGAGGCCTTGACTTGTTGAGTAACGAGAGTTTAACTAGAAGGAATTTACAACTACTCTCCCCTGAGGAGGGAGGTCTCCTATCCATTGGGCCATAACCAGAGACCAGGGTTTCTGTTACACTACAGTTCTCAACTGCTGCATGTGAGCAACCGAACTCTGCTGGTGCACATTTGGAAATATAGGGTTTAAACTGTCTGGTTTAATTGTAGTGTAAATCATTAATATGATAAATAAGTAGTTATAAATGTGTTCTACATGGATAATATTCAATGAAAGGGCTTCCATTTAACTGAAATGCTaacaatattaaacaaaaatgttatatattatattgaaacattttagtaTTCCTTTTTCTGCCATAGACTAAtcttaaattgtttatttactcTGTTAATTCAGAGTTTTTCTATATTTGACTCATCAGTCCATCAGGTAGATTTATCACCGACTTGAGCTCAGTGCAGCAGTGAAACACTCCATCAGTAATGATGAATGCTTGTCCCCTATCTGCCAGGCAGCCACCCAGCGCTAGTTAGTAGCTGTAAATCTGGCCAGTTAACAGTCCACTAACCGGCGACTGACAGGCGGGACTTAGGTTTGGTGTGAGGATGGGATGCAACTGTTGTTCTGTTTCAGAGCCTCTCAACAATGTGCTGAGTGCATGGAGAGGCCCGGCACAACCATTAATCACGGACTTGGTCTGCCGGTGTAGCAAGCGAGCAGAGTGCGAGCTAGAGGTGGGAGTTTTATAGGATGGTGGGAGGTCCGGATGTGCTGATGGGAAGGTAGAGAGATGTGTGCCTGCTGCAAGGTTAAAACCGATGCACTTCCCGCTCTTAGGGTTCCTAAAAGGTCCCAAAGCACTTGCCTCGCAAATTGCATTAAAACTCTTACTGAGCAGCCCGCAATATTTCAGCATAAATGCTTTTCTTTAGTGGAGAGAATTTTACAATCTGTGTTGAACATTAGGAACCATTAGGGACAGAATATGTTGTGTTCAGAAGCTCATTGTGGAATTAAACAagcactgagagagaaataagtctgaattcattatgttttttttaatttttttattggtgAACAGATAGAACTTGCTGGGTTCTGTTTTACCAGCATATTAATATACACTGCTAGTTGAATGCATTGgtttgagggggaaaaatatTTGTACCTCTTGGCTTAACATGCTCTCAAAATAGTTGAGCTGTTTATGTAGAGCGCATATAAGATATGCAAATTTCTTCAAGTTACACTCAGCTTTTGTTGTGAGGGCTGTTCTAATCCCTCATCAACACACCAAATGATTTTGAGCAAACAGAGCTGCTTAATTGCTTTCTGCTTTCTGAATTAATATTACactaatgtaaatataaagtcTCCTCTCTTGAAGTTCAGTTAAACATGAGGTAATGAATAAAGGACCATAGTATCCTTTACAAAGCCCAATAAGAAGAAAGAGTCCTCGAAGACTAAAGACCAAGAAGTCTGACTGAATCTTTGTTAATACTAGCTTAGCCATGAGGAGCGCATCGGTACTGGGATCCCGTGGGACCCAACAAAAAAGTTGCAGGAGCAGGAGGTTTTATGCCCGGTGGGAGTGGGTGGTTAGATGTAAAGGATGCAGTACAAAAAAAGGCCACGtttattaacttattttatGTGGCATTGCACAATGTGTTTACTGCATCCAATCATTCGTCTTCTGTATCTTCTTTgccctggtcagggttgctgtgttttaaatgactcatattctgtatattttggATTAGTCAAATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57076 lncRNA downstream 35586 17716235 ~ 17727208 (-) True G48250
TU57070 lncRNA downstream 52418 17708921 ~ 17710376 (-) True G48248
TU57004 lncRNA downstream 100090 17649131 ~ 17662704 (-) True G48195
TU56927 lncRNA downstream 258934 17500633 ~ 17503860 (-) True G48158
XR_003404617.2 lncRNA downstream 343387 17371442 ~ 17419407 (-) True LOC113545496
XR_004577884.1 lncRNA upstream 34075 17799740 ~ 17801886 (-) True LOC117596895
TU57104 lncRNA upstream 51620 17817285 ~ 17818604 (-) True G48271
TU57216 lncRNA upstream 221757 17987422 ~ 17987631 (-) True G48368
TU57280 lncRNA upstream 272022 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 317992 18083657 ~ 18084805 (-) True G48419
XM_034302660.1 mRNA downstream 101375 17578178 ~ 17661419 (-) True col13a1
XM_026940120.2 mRNA upstream 56920 17822585 ~ 17843789 (-) True ninl
XM_034302564.1 mRNA upstream 130948 17896613 ~ 17902319 (-) True si:dkey-45k15.1
XM_034302847.1 mRNA upstream 161222 17926887 ~ 17933918 (-) False si:dkey-196h17.9
XM_034302846.1 mRNA upstream 161222 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_034302845.1 mRNA upstream 161222 17926887 ~ 17932229 (-) False si:dkey-196h17.9
TU56951 other downstream 101410 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 188372 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 188372 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 286733 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 780065 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 564703 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1550822 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1870173 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2592269 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2592323 20357988 ~ 20369097 (-) False gng2

Expression Profile