RNA id: TU57164


Basic Information

Item Value
RNA id TU57164
length 291
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G48323
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17986281 ~ 17986571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgccaacgtacagagaaatgcatccaatttaATTGGGAGgtacttcatcatgcagcaagacaatgacccaaaacacactgccaacacaacaaaggacctCATCaagggaaaaagtggaaggttttagacttgccaagtcaatcaccagaccttaaaccaattgagcagcatttcccctcctgaagaggagactgacgGGAGAAACCacccaaaacaaacatcaaCTGAAataagctgtggtacaagcctgggaaagcatcacaaaagaagaatgcaacagtttggtgatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57144 lncRNA upstream 44959 17902052 ~ 17941322 (+) True G48305
TU57141 lncRNA upstream 88825 17896322 ~ 17897456 (+) True G48302
TU57020 lncRNA upstream 217345 17726419 ~ 17768936 (+) True G48209
TU56890 lncRNA upstream 383127 17601874 ~ 17603154 (+) True G48133
TU56849 lncRNA upstream 518133 17467948 ~ 17468148 (+) True G48095
XR_004577850.1 lncRNA downstream 95046 18081617 ~ 18084799 (+) True LOC113541886
XR_003404227.2 lncRNA downstream 95046 18081617 ~ 18084799 (+) False LOC113541886
TU57367 lncRNA downstream 187729 18174300 ~ 18174499 (+) True G48478
TU57379 lncRNA downstream 234737 18221308 ~ 18221979 (+) False dlg5a
TU57387 lncRNA downstream 235497 18222068 ~ 18222547 (+) True G48494
XM_026940734.2 mRNA upstream 3536 17971726 ~ 17982745 (+) True trmt61a
XM_034303031.1 mRNA upstream 3536 17971984 ~ 17982745 (+) False trmt61a
XM_026940691.2 mRNA upstream 20975 17943331 ~ 17965306 (+) True mark3a
XM_026940648.2 mRNA upstream 20975 17943332 ~ 17965306 (+) False mark3a
XM_026940656.2 mRNA upstream 20975 17943332 ~ 17965306 (+) False mark3a
XM_026941529.2 mRNA downstream 25244 18011815 ~ 18015780 (+) True LOC113543388
XM_034302568.1 mRNA downstream 31824 18018395 ~ 18046867 (+) False klc1a
XM_034302565.1 mRNA downstream 31825 18018396 ~ 18046867 (+) True klc1a
XM_034302567.1 mRNA downstream 31825 18018396 ~ 18046867 (+) False klc1a
XM_034302569.1 mRNA downstream 31825 18018396 ~ 18046867 (+) False klc1a
TU55884 other upstream 1749633 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 1913214 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 1914361 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2189077 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 3618835 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1354779 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1354779 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1354779 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1354779 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1354779 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile