RNA id: TU57290


Basic Information

Item Value
RNA id TU57290
length 1149
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G48419
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18083657 ~ 18084805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgcTTATGTTCGGTGTCCCGTAacatattaatttattcttcattcattcatgctttGTCTGATCTTAAGACTATGCTAAAGTGTGCTAGATTGGGATGCTATCTGTACATATATTCATAATTCCAactcattttgttaaaaaaaaacaaaaaacaaaaaaccacaaAAGCAGCCAAACAGTTAGAAGGAACCATATAATGATTATGCTCTGATACAACAGTATTGTACAATAAAAGATAATTTGCAGCATGGTATTAGTACTCTTAGAAATTCTAATTCAACTGAAGCTTGTCAGTGTCTTACTTGGTGACCTAGCACACCTGATTTTGTTTCTTGGGCCATGATATTATTGTGCAGCAtcattcacataaaaaaaaaatttacctcCCCAATAGCTGTGTATGTGTAGTTCTCTTCCTCCGGTATCCTCAGCCTATGCGCCCTCTCATCCTTCTTGGTCTACTTGCTATCACTGGCTTAATTTTCATGTTGGGGTCACAAACATAACGGCTGATTCTTCAACAGTCTTTTAGGCACTTTTCCATACTCACTCGTGCGAAAGATTAATTTCTCTGCCTccccttgattttttttccctgtcatTTCTCCATAAAGAGGGTAAATGTCAGGCATGCCTGACTCCTTCTACTGACACATCCATTCCAGCAGATGATTACCATAAGGAAATTGACACTTTAGTGTGCACAAGGAAATTTAATTTACTCTGACATCTTGCTGCATAATGTGCTCCCAAAGAATGTGAAGCTCCAGAttgagattttaaataaatttgactattAACGTGATTACCAATCTTGAACACTTCAAACTTATGCATCTAAATCAATTATGGATTACAAGTTGTTTAAGTGTCTAAAATATGGGCTGTTTAAAGATCCATGAAATAACAATGGACTGCTCACTTCTATCAGTCTATCCATAATTGGTACTCATTTAATTGAGCTAACGAGTTTTAACTGCAGTGAATGTGGTGAATCTGGTGAGGTGTTATGGTTAACTTATATGTGCGTGTTTCAATACAGTTTGTATACTGTAATTCATACATTTTCAGaagcaaatacattttataaaccCAGTTTTACACAATAGCATATAGTGACTTTGTAAAAGGCCAACTATATTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57280 lncRNA downstream 36771 18037687 ~ 18046886 (-) True G48411
TU57216 lncRNA downstream 96026 17987422 ~ 17987631 (-) True G48368
TU57104 lncRNA downstream 265053 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 281771 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 317992 17762794 ~ 17765665 (-) True G48254
XR_004577851.1 lncRNA upstream 2699 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 82215 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA upstream 85220 18170025 ~ 18173182 (-) True G48476
TU57866 lncRNA upstream 758948 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 768708 18853513 ~ 18853713 (-) True G48940
XM_026939061.2 mRNA downstream 2191 18063825 ~ 18081466 (-) False ikzf1
XM_026939053.2 mRNA downstream 2191 18063825 ~ 18081466 (-) False ikzf1
XM_026939048.2 mRNA downstream 2191 18063825 ~ 18081466 (-) False ikzf1
XM_034302887.1 mRNA downstream 2191 18063825 ~ 18081466 (-) True ikzf1
XM_034303123.1 mRNA downstream 28760 18047425 ~ 18054897 (-) False ttl
XM_026934615.2 mRNA upstream 23217 18108022 ~ 18122718 (-) True vwc2
XM_034303057.1 mRNA upstream 43544 18128349 ~ 18158184 (-) False zgc:110045
XM_034303056.1 mRNA upstream 43544 18128349 ~ 18158184 (-) True zgc:110045
XM_026941473.2 mRNA upstream 43544 18128349 ~ 18138930 (-) False zgc:110045
XM_034303058.1 mRNA upstream 45549 18130354 ~ 18158184 (-) False zgc:110045
TU56951 other downstream 422273 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 509235 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 509235 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 607596 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 1100928 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 245563 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1231682 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1551033 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2273129 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2273183 20357988 ~ 20369097 (-) False gng2

Expression Profile