RNA id: TU57364


Basic Information

Item Value
RNA id TU57364
length 2395
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id G48476
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18167020 ~ 18173182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATATCACATTCCATCTTTTTTATTCAtgataaaacatgcatttacattcattttactATGGACATGTGACACTTAGATCCCAGAGTATAGCATAAAGCAACTAGGAATTGGTGCAACAGCAGGCCACAGCAGAGGCTGTTTCTACTGACACTTTCTCATTATTGGTGTTTCCACAATTCCTGATTTCTGAATATAActaaaacagaatttaaaaaaattatttggtaTTTAGCTGATATATAAATCTCTACAAATCATTTAATAGGGATGCACCTATCCGATATGGAGTGTTGGTATCACAGCTGCTTTGGAGTGAAACACTGATACTGAATCAGATTCAACTTGATTTGACTCATTTGATTAGATCAGATGTTTTCTTAAACAGTCTActgaaaaaagaccaaaaagactcaataacagcactttttgAGATTCATAATATTTCCCCTATTTCTTATTGTATAATATACTCAGCATAATGGCccaagtaaagaaaaaaatataggctgctttctataaaataaagatttatataaaaatacagcacagaAATGTTGTACGACATTATGCCATATGTGAAATTATAATTATGGCAACAACATGCAATTGTAGATAAGAGCATTTTTAGAGtataacaatatattttgtATGAACACCGTATGGCACAaatttttacttctttaatGTGACAGAAGCTACATCTTCTTAATCACTTCCACCACAAAGCTTCAACAGCAATTTCTTGTAATCCCCAGAAGTGTCTCCCTGCAAACAGAAATGTCCGTGTAGAGAGACTTGCCATACATCCTCACGTACGCCTGGCGGATGTCCAACATATCCATCTCTGAGCGAGACACCATAATGCGGATCAGGGTGCGGTCTTTGGTTCCCTTACCTTCATGGCTTTGTGGAGTCTCTCAGCAAAGTAGGCTGGTGTGTCCTTAATGCACTTCACTGCACACGAGACATTTTAGATTTGACACATGCAAATATTTCCCAGTACACTGTCAGTAAGAAATACTAAAACTGCACAATGATGATTGACTGGATGGAGAAAGAGACATCCAAGTGGCTTATAAAACTGTCAATAAAACAGCAGTCAAGATTAGAACGAACTAAAACTCAGGCAGGAGAGATGTACAGAAAACATAAACAATACACTTCAAATATGAGGAGAATTCACAAgcagcatacaaaaacacacaaaccatgCGTTGCACACTCAGGAAAAAGGTACAACACAGCAACGTGTGACAAAGAGTATGTCAATCACGGTGGTGATGAACTCAGTGTGTGGTTAAATATTTTAGCATATTACCCTTAGCCTGAGAGTGGACAGCAGGGTAGAGGACAATttgagaaacacaaaacagttaAAGCAAATAcattatcataaaaaaaatgtgaaactaTTTTTCGGAAAGGGACTCATTTTTCTGTTCTACAAGGTTAAGTGAGAAGGTATGGCcatatcaaaatattttgaagCCATGATATTGACTATACAGTACTTCACCATGACACACGTACGGTATAATCTATTCCATGACATACTCTTACATGGCAGTTTATTAGATATACCTAGCTGATAGCGACACTCATCTGCAGTTTAAGCAGTAAACCAACCATAGGTACATGTTGTACACAGTTTACACGTTGTATACAGATTGAGAACAGTCCGTTAACCAAAAATATgggAAAATATGagctatatttttttaactatacTACAAGGTGGACCAACAAAGATGCCAGTGAGTGAACAGTGTTTAACAACACCAGCATTTGTGTGATTTCTACCAAGGTAACACCCATGAtcatgtcactgctgtgctgaagTCCATCCAAATAATATTTGATTAGTCCCATTCCAATGATGGACAGCATAAAGAGACATTTGTCAAACTGTCAGTAACTGTATTCATACAAAATACACCAGTGAATGCATGTATAAGCTAGATGTATATGAAATAAAGTAtatgaaaacacaaaaagtttaaaatttacattacatttattatattgtgtCATTTCATTATCCAGCCATGGTGAGAGAAACAGGCTGAGCACAGTTAAAGCATCTTACCAACAGCCAGCATGCCACTCTCCAGATCTCCAGACATCTCCCTCTCAATACTCTTCTGAATGTCTCGGCCACACATTTGCTGGTATTCCTGGAACacGCTCTAAGGTGAGGTTTGCTTCGAGCACACAGGATGGCATTAAACTTGGACTCATCAGTGCCCAGTTTATTTTCCCCAGCCTGATAGAGAGCCTAAAGAagagtacagtgtgtacaggGTGTATCTGTAGTGTGAGCCTTCAGAACAAAGAAACATGAtagtaacaataaaaaaaggaatgtcAGTCATTACCTGAGCATCTTGTTTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577851.1 lncRNA downstream 75407 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 82215 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 120134 18037687 ~ 18046886 (-) True G48411
TU57216 lncRNA downstream 179389 17987422 ~ 17987631 (-) True G48368
TU57104 lncRNA downstream 348416 17817285 ~ 17818604 (-) True G48271
TU57866 lncRNA upstream 670571 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 680331 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 717381 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 755000 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 783975 18957157 ~ 18957459 (-) True G48970
XM_034303057.1 mRNA downstream 8836 18128349 ~ 18158184 (-) False zgc:110045
XM_034303056.1 mRNA downstream 8836 18128349 ~ 18158184 (-) True zgc:110045
XM_034303058.1 mRNA downstream 8836 18130354 ~ 18158184 (-) False zgc:110045
XM_034303059.1 mRNA downstream 8836 18130877 ~ 18158184 (-) False zgc:110045
XM_026941473.2 mRNA downstream 28090 18128349 ~ 18138930 (-) False zgc:110045
XM_026933173.2 mRNA upstream 207578 18380760 ~ 18613521 (-) False lrmda
XM_026941600.2 mRNA upstream 527734 18700916 ~ 18711275 (-) True vdac2
XM_026933547.2 mRNA upstream 543701 18716883 ~ 18786463 (-) True march8
XM_026933521.2 mRNA upstream 543701 18716883 ~ 18786462 (-) False march8
XM_026933513.2 mRNA upstream 543701 18716883 ~ 18786462 (-) False march8
TU56951 other downstream 505636 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 592598 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 592598 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 690959 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 1184291 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 157186 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1143305 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1462656 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2184752 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2184806 20357988 ~ 20369097 (-) False gng2

Expression Profile