RNA id: XM_026932970.2


Basic Information

Item Value
RNA id XM_026932970.2
length 7537
RNA type mRNA
GC content 0.47
exon number 33
gene id dlg5a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18176741 ~ 18222050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTGACAGCAGGCAGCAGCTACTGAGCTGCTGAGACATGGCGGAGCTTACAGTTTGAGTAGGGAACGCCAACAGTTAGGGTAGTTTCGCTCGCACTAAAGTCGACACATTACCGAATAAATGGCGAAGAAGAAACTATAAAAGTGGATGGAAATGCTGCTGTTCGGAGAATTGCGGTGGAAGAGGAAAGAAGTGGCTAGAAAGGTCTACTTACAGTGTCCTGTCCACAATGCCATCAGATTCAGAGAGCAGTTCGTCCCTCAGCAGTGTTGCCTCCTCGCCTCCGCCTGCGCTCAATGACAACCGTCCGGCCAGTGAGAACGGAGACGCCATCCTGTTCCAGCTGAGGCAGGTGACCAGGGAACGAGATGAACTTCGCAAGCGGCTCGCTCTTGCCTCGCCCGGCACTACCTTCGACGACTGCagGCCAAATTCCAAAGCCAGTCACGACTATGAGCGGCTCAAGACCCAGTGCATGAAGGCCATGGCAGATCTACAGTCTCTGCAGAACCAGCATACCAAGACCCTTAAGAGGTGTGAGGAGGCAGTGAAGGAAGCCGACTTCTACCACATGCTGCACAGTCGTCTCCTGAGTGATCAGTCTCAGCTAAAGGAGGAGATGGAGGTGATGAGAAGAGATAATGCTCAGCTAGTAAGAGAACACAACCATCTGAAACAGAGCTGCGAGGAGCTCAAGAGACTGCACTCAGAGGACCAGAAAGAGGTGGCTGATATGAGACTCCAGCAACAGCAGGTTATTAGGGAGAATGGGTCCTCAGAGGTTCTGAAACTCTATGACACTGCAATGGATAGGCTGGAGGGGTTGAAGAAAGAATATGACAACTTGAGCAAGCGATACAGCGAAAAGGTagccaatcacaacacagaTCTGAGTCGACTGGAACAGGTGGAGGAAGAGAACAGACGGCTTCAGAAACAGACTGACACTTTGATGAAGCAGAGGGATACAGCCATGCACTACCAACAACAGTACTCAGCCTCTATCCGGAGGTTTGATTCTGTGCAGCAGGAGCTGAATAAAGCTTCAGCTCAGAATAAAGAGCTGcaaagagagatggaaaggcTGCAGTCAGAGATAACGCGTTACAAGAACTTCCAGCTGAAGGCGGTGAAGGATGCTGAGAAGTACAAGGAGGAGCGAGACTCTGTGTTTAATGAGTACAGGCTGATCATGAGTGAAAGGGACCAGGTCATCAAAGAAGTGGACAAGCTGCAGACAGAACTGGAAGCAGCTGAAGCTCGCCTCAAAAACAACTCATCAGAGAAGATGGTTGCCAGCGAGGAGTTGGAAGCACTCAGACAGGAGCTTAATTCATCACTGGTGGATCGGGACCGAGCCATCTGTGAGCGTAACGAGCTGCTGGAGAAATACTGCCATGAAGTGAAGGATAAAGCAGAGGCTCAGAAAGAGCTGAGTCAGGCCTGCAAAGACATCGAAACTGTGCGTGAGGAGCGAGACGTGGccaggaaagaaagaactgaAGCCATTATACAGAGGGACCAACTACTGCGGGAGTACTACCAGGCCAGACAGAAACAAGACACAGCCACTCTGGACATGGAGCGTGCCAATAAAGAGATCGAGGTGTTGAGGAAGCAATGTGAGGCCATGTCTCAAGAGCTGAAGGAGGCTGTGCAGGAGGCTGAGGTGGCGAAATGTCGCAGGGACTGGGCCTTCCAGGAAAGAGACAAGATtgtggcagagagagaaagcatccGGACTCTGTGTGATAACTTGCGCAGAGAAAGGGACCGTGCGGTTAGTGACCTGGCTGATGCCCTGCGCAACCTGGATGACATGAGGAAACAGAAGAACGATGCTGTCAGAGAACTGAAAGAACTGAAGGAGAAGATGGAGTGTCAGCAGGAGAAGGAGACACCATTCTACCCACTGCTGGCACACAGCTCGCATGATTCAGCCATAGATACAGATTCATTGGAATGGGAGACTGAGGTGGTGGAGTTTGAGAAGGACAGAGATGACATGGACCTGAAGGCACTGGGGTTTGATATTGCAGAGGGGGTGAATGATCCATATTTACCAGGAGATTGTGGGATTTTTGTTACCAGAGTGGACAAAGGAAGTATTGCAGATGGGAGGTTAAGAGTGAATGACTGGCTGCTGAAGATAAATGACATAGACCTTACTAACAAAGACAAGAAGCAGGTCATCAAAGCTGTGCTTAATGGAGGAGGTGTGATCAATATGGTGGTGCGCAGGAGAAAGTCTTTAGGGGGAAGACTAGTTACCCCTGTTCACATTAATCTCATTGGGCACAAAGACAGTGGCATTGGCCTGGAGGGCGGTGTATATGTGACAGCTATAGCAGCAGGCAGTCCAGCTGCCAGAGAAGGGTCTCTTAACATTGGAGATCGCCTCATTGCTATAAATGGAATTGCTCTGGATAACAAATCTGTGACAGAGTGTGAGGCTCTGCTAAGGGGCTGCAGGGACTCACTCAGCCTCTCCCTCATGAAGTTCTTCCCCCAGAGCACATCAGGCCACAACATCTTTGAGAGCCTGAGGGAAGCGGAGAAATGCAATGGCAGAATTCACATGTCAGAGGTCCACTCTCGTAACAGCCGGAACCTGAAGCACAATAGCTCCACCCAGACAGACATTTACAGTGGTGAGGCGGGAGGAGAACGGAGGAAGCAGAGGGCTGACTCTGAAGAGAGGAAGCCCTTCTCTCCCTCTACTCTGCACCCCAGCACCCTGTGTACCCGTTATGGTCCCAGCGCCTTCCAGGAGGTTTGCTACACTCGCCCTGAATCAGCCGGGCCTGACTGCAGTACCTTGGAGCCAGCACCTGACACCAAGCACAGCGGTGGCACCTGGCCCAAAATGGTGGTTGGAGTTCCCATGGTGGCAGAAAGCCCAGCCCAGCTGTCCATCTACAAGTCACCCAAGCAAAGGAAGTCCATTTTTGATGCAGACACCTTCAAGAGGCCAGACACACCCTCCAAAATGGAATACCTAACTAGCCATTCACCACAACCTTCCAAAACTGACAGTATGACCACACCCCCAACCCCGCCTACACGTAGCGATTCATTCAAGTTCAAGCCGAAGCAGCAGGGCAGCTCGGCCTCAGACTCCACCATTACTGAGAGCCAACAGGAAGAGTGTAATGGGAATTTGTGCTTCACGGAGGTTGGGCACGAGGGCAGGGTGCTCAGCTCTAGGAAGTCATGTGAAGAGGACATTGGGCACACACGGCTTGATGAGCCTGAGGTAAAGCGGCCACGTCCCAAATCAGCCCCGGCTCTCAGGCGCAGGATGACACCTCAGTCCATCCCCCTTCAGAGCTTTCAGAGCTACTCTAATGATGGGGACAGTTTAGACCAGAGGGATGTGTTGCGCTCATCTCCTAGTCGCCCTTACAGACACAGTGTAGGGTTCGTTCCCACACTCTGTAATGGAACCCTGCCACCCAATTCAGTACATCGTGGTCTGGCCCCATGCACAGCAGTGACAGCTGTTATGAGGAACCCTGTTTACACTGTCCGCAGTCACAGAGTGCACACCAGCAACTGCCCCTCTGTCATCAACCAGATCtgccatcaacacacacatcccaGcCCCCAACATCAAGGGCGTCTGAGTCTGGACCTTAGCCAGAAGCGTTCTGCTGAGTATTCAGAGTCCTCCCGCAGCAGCCGAACCTCTCATGGCACCAACTCGCTGCCGTCCAGTGCCAGACTTGGTTCATCCAGTAATGTACAGTATTGCACAGAAAGGATAAAAATCCCTCCCACACCACGGTATCCACGTTCAATGCTGGGCTCTGACAGAGggTCTCTGTCCCACTCAGAATGCAGCAGTCCCAgtctcatcacaccacccctgtCCCCACTCAATCTTGAGACATCCTCGTTTGCTTCCAGTCAGTCCCAGAACTCCATCTCCACACGGATCTCCGTCAGTCCCGTACCCACGGGAGACCACAGGAAAGACAGGCCGTACCTGGAGGAGCCGAGGAACGTGATTGTGCATAAAGGCGCTGAACCTCTGGGCATCTCCATCGTCAGTGGCGAGAATGGCGGTATCTTTGTATCCAAGGTGACTGGAGGCAGCATTGCTCATCAGGCAGGCCTGGAGTATGGAGACCAGCTTCTTGAGTATAATGGGATAAACCTGCGTAATGCCACTGAGCAGCAGGCGCGACTTGTCATAGGTCAGCAGTGTGACACCATCACAATCATGGCACAGTACAACCCACACATGTACCAGCTGGGCTACCACTCACGCTCCAGTTCTCGGATGGAGCCAGTGAGCAGCCAGTCCACTCCTCAGGGCAGCGGAGCTACCACACCAGATAACCACTCAACCATAGACACACTCAGTGAGCAGGATGAAGGAACCCTTACTCCATCATCCAAACAAACCACACCTACCACCAGCCCACACAGCTTCATCAGAATGTCATCGGAGGGCAATAAGAAGATTCCAGAGCCCCGAGTGGTGTCTGTGAGGAAGACACAGGTGGAGCTGGGTGTTCAGATTTGTGGGGGGAATCTGTGTGGGATCTTTGTGGAGAATCTGGAGGAGGACAGTCCTGCTAAGTTGGCAGATGTCCTAATGCCTGGAGACATGATCTTGGAGTATAACTCGTTGGATATGAAGAATAAGACTGCAGAGGAGGCTTACCTGGAAATGCTCAAGCCAGCAGAAGTGGTCACACTGAAAGTGCAGCAACGTTTGGATGAGTTTAACCAGCTTAAAGATACTGCTGGAGATGGATTTTATATCAGAGCACTTTATGACCGAGTGGCTGAGACAGAACAGGATCTTTCCTTTAAGAAGGATGACATTCTTTATGTGGATGACACACTACCGAATGGCAACTTTGGCACCTGGATGGCCTGGCAACTTGATGAAAATGCACAAAAGATGCAAAGGGGGCAAATTCCCAGTAAATACATGATGGATCAGGAGTTCTACCGTAGACATAGCATGACTGAACTGAAAGATGAGACAGGTTCGAGTAAAACACTCTCCGCAGCTGCGCGCAGATCTTTCTTTCGCAGAAAACAGAAGCACAAACGCAGCAGCTCCAAAGATGGCAAAGACCTGCTAGCCCTGGATGCCATTAGCACAGATTCCATCCCATTTTTAGAGGACTGCGTGAGCCTTGCCTATCAGAGAGTGCAGAAGGTGGACTGCACGTCTCCCAGGCCAGTATTGCTACTGGGCCCACTGGTGGACCCGGTTAAAGACATGCTGGTCAAAGAGTCTCCAGGGAAATTCAGCAGATGTGTACTTGAGGTGATGAAGGCCTCTCAACAAGCCATTGAGCGAGGGGTGAAGGACTGCCTTTTCATTGACTACAAACGAAGGAGCGGCCACTTTGATGTCACAACTGTTGCTTCCATCAAGGAGATCACAGACAAGgACTGTCACTGTTTGCTTGACATTGCACCCCATGCCATTGAAAGGCTTCATAGCGTTCACATATATCCAATCGTCATTTTCATTCGCTACAAAAATGCAAAGCAAATAAAAGAACTGAAAGATCCAGTGTATCTGCGGGATAAAGTTTCTCAAAAACATTCCAAGGAGCAGTTTGAGGTTGCACAGAAGATTGAGCAAGAGTACAGCAAATTCTTCACAGGTATTGTCCAAGGAGGCATGTTGCCCTACATTTGCACTCAAATCGTGACTATAGTGGATCAGGAGCAGAGTAAAGTCCTTTGGACTCCGCTGGGCTCGCCTTAGGTGGCTGAGCCAGTCCTCTCCACCTactgcctcacacacacctgagcttACAAACACTATGCTTTTACACTCGCACTACATACAAAGGTACACTACAATGAGCATTGCATTgcatccttttttcttttattattcctttatgtttaattgtaactttttttttatgtttaattgtaACATTTTATGTGTAATTGTAATGGAGCctcttatttgtttgtgtgtgtgtatgtgtgtgtatgtgtgtgtctacgCGTGTGTGTGATCGTGCGTGTGATTGTGCGTGTGTGCTCGCAAATGCAGGATTATAGCACTGAAGTTTTCATTGTTTTCCTTTGGTCTTCCTGACAGACATCCAACGATTAGTAATGCTGCATCTAAAACACTTGTTTACAGATGATCAGTCCATGAATTGTTATTTAATGTCTGCTTGAATGTGTCCTTCCCCTTTGATCTTAATGAAGTCATATCCCATGTCACCTCTCCCTAATCCAAACCCAAATTCAGCCCTGTATCCCAACCCTGGTCTACCAAAATGGCAcacgtgtgtctgtgttttctaCATCAGTAAGAGGACTGAAAACTCACTGTAGATAAAGAGTAAGCTTTGGTAAGcttgtttatgtaaatgtaatggtTTTGAGGTTGAAGTGAACAGCAACTAAGCATTTTACAGGCCAAATGGAAGTGCCTTTGGAGATCTCCTGAGCGTATGACAATGGCATGTTGAAAGTCTGGTGTTTGAAACTCCTCAGATTGCACTCCAGGGCTAGACAGACCACTGTGGTAACATTCTCATAGaggaaaatatgtttaaaagagAACATGACATCTTACACTAATACAGTTCTGAATTAGAGGCACTCACTTAACCTGTATGTATGCAAACTTGTCTAAATATAtagatctatatatatatatatatatatataaacatatataaatatattaaatgtattttgacTAGGCTATTGGCCTAGGGGAGTGCAGCAGGTGTCCAGTCAGGTCTTAGCAGATATAAGCATGTTCCTTTTGTATGTTtcttctcgtttttttttttttgtttgtcagtcACTTTTATATGTACCCACTCCATGGAAGGAAGAGATGCAGGGTAAATATAATTGGGTCTCTTATGCtaaatctgtttaaatgttAGTCATGTTTCATGTATATTtaagttttgttgtttttttttaaattcagcagGCACAGTTGCATACTTTATTCAGACCAGTAATCCCACCAGttaattttgtgccaaaattcAATGTGTCcatttcttgtatttttgttttgcacttgcAATATTATGGACCCTAAACAATAGCTGGGTCTTCTTAGGTTTCCAGTAGAGGTTGAAAATAGGTACTATACTTATTACTTTTGTgatttaatattcatttgtgTATCACTCATGTTCCATACATTTCATTAATTGCCTCTATTCTTAAATTAGAAGAGAACCATTGCATTATTTACactctcatttaaaaaaagggatTTCTTATTGCACAGTTTTCTCAAAGGAAAATCAGTCCCAGCCTTGTCTATTGGGTTGAAATTAGACATTTTGTTTCAAGTGCTATTCATATCtaggtgttttttcttttctaaataaGTAGCTTATGGTTTTAAATCAGAGGGATTCAGCCAATACAATTGTATTTTAAGAAGAATGACTAGATGACAGGTACTGTTATTGATTGGGATTTTCAATATTACAAAAGAATGTGATTTGTATGAAATAATGTGAAACACATTAACATGAGAATAAAAGTCATTTTCTGTATCACACTA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57367 lncRNA upstream 2242 18174300 ~ 18174499 (+) True G48478
XR_004577850.1 lncRNA upstream 91942 18081617 ~ 18084799 (+) True LOC113541886
XR_003404227.2 lncRNA upstream 91942 18081617 ~ 18084799 (+) False LOC113541886
TU57164 lncRNA upstream 190170 17986281 ~ 17986571 (+) True G48323
TU57144 lncRNA upstream 235419 17902052 ~ 17941322 (+) True G48305
TU57387 lncRNA downstream 18 18222068 ~ 18222547 (+) True G48494
TU57465 lncRNA downstream 238623 18460673 ~ 18462196 (+) True G48571
TU57373 lncRNA downstream 451261 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA downstream 455180 18677230 ~ 18701906 (+) True G48482
TU57372 lncRNA downstream 478806 18700856 ~ 18701906 (+) False G48482
XM_026939202.2 mRNA upstream 3554 18158463 ~ 18173187 (+) True anxa11a
XM_026945478.2 mRNA upstream 27001 18140689 ~ 18149740 (+) False mocos
XM_034303143.1 mRNA downstream 5210 18227260 ~ 18372489 (+) True kcnma1a
XM_026944967.2 mRNA downstream 397179 18619229 ~ 18622295 (+) True znf503
XM_026933092.2 mRNA downstream 461446 18683496 ~ 18686611 (+) True comtd1
XM_026933079.2 mRNA downstream 466427 18688477 ~ 18691778 (+) True ifit8
XM_026934506.2 mRNA downstream 473670 18695720 ~ 18699679 (+) True LOC113538988
TU55884 other upstream 1940093 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2103674 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2104821 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2379537 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 3809295 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1119300 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1119300 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1119300 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1119300 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1119300 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile