RNA id: TU57585


Basic Information

Item Value
RNA id TU57585
length 2063
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G48690
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18708032 ~ 18711295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCCACTGTTATGAAAGCCTTGGGTTTAATGTACAGCTTAAGAGTAGGGTCCAAATCCGACCCCAGGACCAAAGGCAGTCCGCAGACAAGATGTTAACTGGCCTGTGGCTTCCGTCAAGGAATGTATAATAGGTGGCCCAACGTTGcaatttttcctttcacctgatggtggcagcagaatAGCTAAAATGCAagagcctttttttccccctctgtctACACCAGCAAGTTAATTAATCAGTAGAATGATTATCATGTCTatacaaaaaaagcacaaagctAACAGTGAAAAGGGGCACCTTCAAAACAACTGGAAAACACTAAGCTTTGTGGAAACCTTTCAGGAAGTCTTGAAAGTTTCCTTAACTAAAGTGGATCTGCAGCAAAAGTGCTGCAATTCCTCCATCGTTCCCCTGATTTGGATATAAGTattcttaaattaaagctgaaagtcagtCTGCACTCTGAGCTGTATTCATTatgttaaataatgaatatgacacacacacatacattaattatgtgtgtgtgtgtgtgtgtatgtatacatatatataattttgtaagGCCTGGACATGACTTATCATTCCTGCAGTGCCATTAGTCCCTGTCTAGGTGTGATCTAGGTGTCCACCATGTTTCTActaaaaaaagacaacattgGACTTGCTCAATATGGTATCAGGTTACAACTAACCTTATGCTCTGTAGGAGTCAGCAAATGTTTCTATATAAGACACAAGTGTCTTTAAGCTGTTTTCAAGTTGCCACTGAGGCATAGACAGAGCTGAAATGTATACCTCCTTCAGCAAACTATAATTTCATAATCTTAGTTAAAGCCTTAACAGACTAAGATATTTACCCTGTGTTTGGTGAGAAGGTTGTATCAAAAGTCAGCTTCAGCCCTTTTGCAATctaaaaagacagacaaaggcTATTAAGTGCAATGAACCACATAAATCAATCACACAAATTTTCCTTGATTCCGTCTCTGCAGTCAGACCTGGTCTTCAATGGTGATCTCTGTTCCTAGAGTGTTGTCAGTGTTCCACTTCTCCGTAAAGGTCAAGCCATACTCAGGCCTCTTGTATTTAGTTTCCAGACTGCCCACCACTTTGCTGGTGTCAGTGTTGGAGGAACCTGAAGTCTTAAACTCCACTCCACTGGCTGATTTCGTCTTGACATCAAGTTTCACCAGACCAAAGCCATATCCCTTGTTGAAGATGTCCTTGGCAGATTTTCCAAGATCAGCATATGTTGGGGGGACTGCCATTGTCTGTGAAATACAAAGAAACAGTGGTCAAGTAAAAAACATCAATTACTAGTAGCTCAGAGCAAACACCCACACCACACAAGACTAGACCATACAAGTGCTAAATtcgtatgaatgaatgaatgtctaCAGAGGATTATCTCTGGTTTGCCATATTTCCTCTCAAAGGTACACTACTGTTAGCTTGCTGCACACAGATGGGTGGGCTAATCAGACATGACAGCGGGCCACACCTTTCTGAGTCTTTCATGAGGAAGTGAACACGCTGCATTCCTTGACAGTCTGTTATACTGGAATATCCCTGAGTGCACCTGTACAGTCTGTACATGAGGCAGCATTGAGAGGTGACATAACTCTTATATGATCAGGTATATATTTTAGGCTCAAGGCCTGCATGACCCATGTTGTCCTTGCGTCTCATGGTGACCATGTGATAGAAATGTCCAGCCTTTCAAATTATACCTTTGCAGTACCTTCTGTTTTAGTATTAAACCACAAACAGTCAGCATCCTGTATCTGACTGATGTTTGTGCAATCGATTTTGGGAAATGTCTTTGAGGGAACAGGGTGTTCCTTAGAGTTCCCTAGAGTTCACTGCTCCAAACGTCTCACTGACCAGCTTACTTTGTGCTTACACCTcaaaaaaatactttgaaaatgaacataaatgacCATGTAAAGCGAGAATCCTGAGGAGATCTTGACAAGGTTAAAAGTGGAGGCCATCTTGGCCAGAGATTGGCTGCTCACATTGACATGATGCAGTTGAACACCGGCATATCCCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57373 lncRNA upstream 6126 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA upstream 6126 18677230 ~ 18701906 (+) True G48482
TU57372 lncRNA upstream 6126 18700856 ~ 18701906 (+) False G48482
TU57465 lncRNA upstream 245836 18460673 ~ 18462196 (+) True G48571
TU57387 lncRNA upstream 485485 18222068 ~ 18222547 (+) True G48494
TU57821 lncRNA downstream 201115 18911486 ~ 18912177 (+) False zgc:110319
TU57833 lncRNA downstream 257035 18967406 ~ 18967777 (+) True G48908
TU57836 lncRNA downstream 260427 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 303820 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 316636 19027007 ~ 19036636 (+) False selenou1a
XM_026934506.2 mRNA upstream 8353 18695720 ~ 18699679 (+) True LOC113538988
XM_026933079.2 mRNA upstream 16254 18688477 ~ 18691778 (+) True ifit8
XM_026933092.2 mRNA upstream 21421 18683496 ~ 18686611 (+) True comtd1
XM_026944967.2 mRNA upstream 85737 18619229 ~ 18622295 (+) True znf503
XM_034303143.1 mRNA upstream 335543 18227260 ~ 18372489 (+) True kcnma1a
XM_026935928.2 mRNA downstream 142331 18852702 ~ 18883431 (+) False tet1
XM_026935913.2 mRNA downstream 144470 18854841 ~ 18883431 (+) True tet1
XM_034302756.1 mRNA downstream 144470 18854841 ~ 18883431 (+) False tet1
XM_026937057.2 mRNA downstream 180850 18891221 ~ 18895398 (+) True eif4e1c
XM_026937020.2 mRNA downstream 192067 18902438 ~ 18912195 (+) True zgc:110319
TU55884 other upstream 2471384 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2634965 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2636112 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2910828 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4340586 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 630979 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 630979 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 630979 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 630979 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 630979 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile