RNA id: TU57833


Basic Information

Item Value
RNA id TU57833
length 372
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G48908
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18967406 ~ 18967777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gattttttttttttttaacacatagCCATTGCCAGTTAAACAGCTGACAAACTCTCCATAAGCAGAACCAAGCTGAACATTCATATCTATTTTCCTTTAGTTGTTCTTAAATATAGACACAGTGAAAAGAGATCACTCatttatgatgattattatgaAGAGGTCTTtcattatttgaatatttgtgaTTAAATGGCCAGGGACAATTGTAACTTTCCACCTTCTAGAAAAGGTGCAGTGTTGAGTTACCTCACTGTTACCTGTTATTTGTTGCTGAGTTATGCATAGTTGTATGTACATACTGATGATTTCAGTGGAGTTGTGAGACCTCAGATTGAGATTGAATGTAATTAAGGGTAGAGCACAAAGAAC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57821 lncRNA upstream 55229 18911486 ~ 18912177 (+) False zgc:110319
TU57584 lncRNA upstream 256111 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA upstream 257035 18708032 ~ 18710371 (+) True G48690
TU57373 lncRNA upstream 265500 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA upstream 265500 18677230 ~ 18701906 (+) True G48482
TU57836 lncRNA downstream 3021 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 46414 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 59230 19027007 ~ 19036636 (+) False selenou1a
TU57791 lncRNA downstream 59230 19027007 ~ 19036636 (+) False selenou1a
TU58057 lncRNA downstream 234453 19202230 ~ 19203687 (+) True G49104
XM_026938324.2 mRNA upstream 3531 18958384 ~ 18963875 (+) True si:ch211-198a12.6
XM_026938333.2 mRNA upstream 3531 18958384 ~ 18963875 (+) False si:ch211-198a12.6
XM_034302736.1 mRNA upstream 3531 18958385 ~ 18963875 (+) False si:ch211-198a12.6
XM_026938315.2 mRNA upstream 3531 18958385 ~ 18963875 (+) False si:ch211-198a12.6
XM_026943192.2 mRNA upstream 11180 18939765 ~ 18956226 (+) True stox1
XM_026932800.2 mRNA downstream 717 18968494 ~ 18973206 (+) True LOC113538004
XM_034301731.1 mRNA downstream 5860 18973637 ~ 18976601 (+) True LOC117596455
XM_026942747.2 mRNA downstream 9457 18977234 ~ 18981316 (+) True ftr14l
XM_026939350.2 mRNA downstream 15329 18983106 ~ 19010647 (+) True zgc:154058
XM_034302687.1 mRNA downstream 15329 18983106 ~ 19010647 (+) False zgc:154058
TU55884 other upstream 2730758 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2894339 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2895486 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3170202 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4599960 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 373573 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 373573 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 373573 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 373573 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 373573 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile