RNA id: TU58001



Basic Information


Item Value
RNA id TU58001
length 225
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G49053
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19052527 ~ 19052751 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGGTGATGTGTCAGGATCCAGGGGGTCGGTCTGGATGGCTGTCTCAGTGCGATCAGAGCTGGGCCTGCGTGATGAGACATCCTCGGTAGAGATGCACACATCCACCATTTCTGAGCCAAATGGAGGGGGAAACATGACCTGAGAGAGGCCGCTGAGGGAGCTGACTGGTGTCCcagaggacagagaggaggtggaCGAGTAGGAGTCTGAACCCTGAGAGGAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57913 lncRNA downstream 82731 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 95068 18957157 ~ 18957459 (-) True G48970
TU57886 lncRNA downstream 123025 18928182 ~ 18929502 (-) True G48954
TU57878 lncRNA downstream 161715 18890563 ~ 18890812 (-) True G48947
TU57868 lncRNA downstream 198814 18853513 ~ 18853713 (-) True G48940
TU58066 lncRNA upstream 137576 19190327 ~ 19190615 (-) True G49108
TU58155 lncRNA upstream 198842 19251593 ~ 19251863 (-) True G49184
TU58193 lncRNA upstream 347913 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 374995 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 635841 19688592 ~ 19688877 (-) True G49481
XM_026934553.2 mRNA downstream 8206 19036992 ~ 19044321 (-) True sfxn3
XM_026932754.2 mRNA downstream 33618 19011981 ~ 19018909 (-) True mat1a
XM_026937044.2 mRNA downstream 149007 18898163 ~ 18903520 (-) True si:dkey-228d14.5
XM_034302735.1 mRNA downstream 149524 18898163 ~ 18903003 (-) False si:dkey-228d14.5
XM_026932472.2 mRNA downstream 200420 18845152 ~ 18852107 (-) True slc25a16
XM_034303009.1 mRNA upstream 12282 19065033 ~ 19114569 (-) False lzts2a
XM_026942868.2 mRNA upstream 12282 19065033 ~ 19082306 (-) True lzts2a
XM_034302895.1 mRNA upstream 85744 19138495 ~ 19171153 (-) True sema4ga
XM_026941939.2 mRNA upstream 120489 19173240 ~ 19185983 (-) True slf2
XM_034303029.1 mRNA upstream 120489 19173240 ~ 19185975 (-) False slf2
TU57664 other downstream 439126 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1391143 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1478105 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1478105 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1576466 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 263736 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 583087 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1305183 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1305237 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1305237 20357988 ~ 20369429 (-) False gng2

Expression Profile