RNA id: XR_004577568.1


Basic Information

Item Value
RNA id XR_004577568.1
length 2514
RNA type misc_RNA
GC content 0.43
exon number 15
gene id sfxn5a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19341350 ~ 19356098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGACCGAGTGCAGTTCAGCACAAACTTTCACTGTCGCTGCGCGGGGTTTGGTCTACTATGTCTCAGTCCACACTGTATCCTCAGTTTAGACTTGGCGAGTCTCGGTTTGATCAGGGGTCCTTTTATGGGAGGTTAAGACATTTCCTGGATGTGATTGACCCTCGCACGCTCTTTGTATCAGAGAGTCAtctaaatgaatgtgtgaaacTCTTAGAACACTTTAAAGATGGCACTCTACCCACAGGTGTGACAAATGCACAGCTTTGGGAGGCTCAGAAGGTAAAACAGGCCATCTTCCATCCAGACACTGGAGAGAAGATCCCCATGCCCTTTCGCATGTCAGgTTATATCCCCTTTGGTACCCCAGTGGTTGTGGGTCTCCTACTTCCCAATCAGACCCTGGCATCTACTATATTCTGGCAGTGGTTGAACCAGAGCCATAATGCTTGTGTGAACTACTGCAATCGTAACGCATCTAAGTCTACAGGGATGTCAAAATTCTTTCAGGGATACCTGGGTGCAGTCAGCAGTGCAGTTACCATTGCAgTGGGACTGAATGTTCTGATTCAGAGAGCTGAGCGTTTCAGCCCAGCCACAAGACTTATGGTCCAAAGATTCATCCCTTTTCCTGCTGttgCAAGTGccaatgtgtgtaatgtgttgcTGATGCGCCACAGTGAGCTGTCTGAAGGCATCAGTGTGCTGGATGAGCATGGTAACATAGTGGCCACCTCTAAGCTGGCAGCCAGACGCGCTGTGTTGGAGACAGCTGTGACCCGTGTAGTCCTGCCCATGCCTATCCTGGTGCTGCCACCCATGCTGATGGCCATGCTGGAGAGactccCCTTACTGCAGACGTACCCTCGCCTTGTGCTGCCCGTGCACAGTGTGGTGTGTCTCTGTGCATTTAGTCTGGCTCTGCCCGTTGCCATCAGTCTGTTCCCCCAGAATAGCCAGATTCATGTATCTCTGCTTGAGCCAGAGATCTCTGCAGCAACTGGATGCAAGTTCCTGACCTACAACAAAGGCCTTTAACCAATTTACTAGCTTGGCACTATGCGATAAACGACTCAGGAGACTCATGACtcggatgtgtgtgtggattttagAATCACTTGCACACCGTGACAGGTGCATTCACACACCAGCGCTAATCACTTGTCTTCATTGCAAGCCATCTACAGATCTGGAAGGAGGGGCCCTTTGTTTTTCTACCTGGTTCTCATGGCAACATGTCACGGTGGGCCATGGTGATAGAGGGTGGGACATGAAGCTGCATGCACAATCATTAACCATATAGAACAGCCTTAGggatgccacacacacacacacacacacacacacacatatttactaCATTAAACCCTTAAACCGTGCTCAAAgccttcattcattttaaactgTCAGTTGTActgtcttaaaaaaaagattaactaGATTCTCATGGCATGTCACGAAATCAGCATTTGCTTAGTTCTTGCTTTATTTCAACTTTTAAGGATgcttatcattatcattatttattttaattcatttcatctTTAATAATATAAAGCAAAATTTTGCCATTTTGACACATGGACAGTCTTGGCAATACGGCTtgtatattcatgtatattttcCCTACACATGCATTTCTATTTAGAAATTTACAAGATTTGTCTTATGAGTAAGCAAAGCATCCTATACTTGTGCCTATTTTTCACTACAGAGTAACAGGTCACCAGAAGTGATATTTTCCAAGTAAGCTATATGTATGGTATATATAGAGAGATTCTTcatgaaaatatataacatgCAATAAGTGGTATTTAAAGctcaaacatacaaacattttattattatttcaaacaAGAAGTTTTTCTTACCATTAATATCTTGTATCGCCTGCCCTGTAGtgtctaacaaggttggagacacttgtTGATGGATCTTGGACCACTCCTTCATGTCCTCTTCgattcagaccacaggtttccaatagggttcaaatccagagactgagCTGGTCATTGCAgagcactgatttttttttgtttctgttgaaGTTTCTGTGCAGATTTGGAAGTATATTTGGCTCATCATCGTGAAATCTTGAAAGGTGAAAGTGTACATATGGCCAAatctgaacctcctggcagacTCGGTCATGCTtggcagaattcatgatgccatcattCTTTACAAGTTCACTTGAACCACCAGCCAAAAACCAGCCCCAAGGCATCAGTGATCCACTGTATTTTACAGCAGGTTTCAGGTGCTTTTTGTTGTATGCAGTCCTCTTTTTATCACCAAAGATGCTGATGGTATGCACGACCTAAAGGTTTGATTttagtctcatctgaccacacacacaatgccaTCTGTAGTTCTAATGACACTTGGTGAAGTTCAGATGCTGCATTTTATAAGACGCTCTCAGGAAGGGCTTCTTTCTGGCAACGcttccaaacagcttgttgttatgaaagtggtatttaacagtttattttGAAACTTGACAACCACA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58126 lncRNA upstream 46057 19295082 ~ 19295293 (+) True G49157
TU58109 lncRNA upstream 73761 19266545 ~ 19267589 (+) True G49146
TU58106 lncRNA upstream 84190 19256096 ~ 19257160 (+) False LOC113539574
TU58081 lncRNA upstream 124470 19214792 ~ 19216880 (+) False grxcr1b
TU58057 lncRNA upstream 137663 19202230 ~ 19203687 (+) True G49104
TU58192 lncRNA downstream 44553 19400651 ~ 19400883 (+) True G49214
TU58299 lncRNA downstream 258619 19614717 ~ 19617317 (+) False G49316
TU58301 lncRNA downstream 258619 19614717 ~ 19617317 (+) False G49316
TU58302 lncRNA downstream 258619 19614717 ~ 19617317 (+) False G49316
TU58303 lncRNA downstream 258619 19614717 ~ 19617317 (+) True G49316
XM_034302903.1 mRNA upstream 1713 19318825 ~ 19339637 (+) False rab11fip5a
XM_026945763.2 mRNA downstream 46834 19402932 ~ 19410091 (+) True cdc25b
XM_026945771.2 mRNA downstream 46837 19402935 ~ 19410091 (+) False cdc25b
XM_026933896.2 mRNA downstream 56573 19412671 ~ 19426321 (+) True ap5s1
XM_026933276.2 mRNA downstream 160223 19516321 ~ 19604187 (+) True gfra4a
XM_026933336.2 mRNA downstream 418649 19774747 ~ 19786571 (+) True ky
TU55884 other upstream 3104702 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 3268283 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 3269430 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3544146 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4973904 14361367 ~ 14367446 (+) False cgas
TU59013 other downstream 1218875 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 1649352 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 2665309 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 3428230 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 3758087 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile