RNA id: TU58299


Basic Information

Item Value
RNA id TU58299
length 2567
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G49316
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19614717 ~ 19617317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAATTTCAGCATTTATTATAGACAAAAATTGTCTTTCtttatgtacatgtataatTACAGCTCCAGTTATAATTCCCAAgatttgttttactgttttttttacacatcataTTTGTGCTTAATTTAAGGTTTGTTCATGATGACATTCGCTATCTTACATACAAAAAGAAGCTGCAGTGAGCTCCCACTGTAAAAGCTGGGGATACTCGCCCTGCCAAGCAAGTCATTCAACGGAAATGGCATTCACATTAATGTTCATCATTATGTTACAAAAAGAGTGCATCAGCTGctacattatacacattatactataGATCCCAATATCTACAGTGATTACTGTACAGAAAGCAGGTGGTGGGGCTGAGGCGTAGGACTGGGTAAAGATCTCTTTGAGACCTGAAATAATCTGTTAATTGGCTCCCACACCAAAAGACTAGCTCCTTTCATGTCTGTGTTCttcattatgtgtgtaaaagcatgtgtgtgtgagtgcttgtCATACCTAGTTTCTTACAACTTATTATATGCTGCCTAAACCTGCAGAATTGAGCTTCCATCTCACTTTTCATTGAGCAGTTATTGAAGTGGACAGTGCTGTTCTCAACCGCTCCCAAGCTATTGGTGCTACTTCCTCATTTTGATGGATCTTAACATTTAACCCATCAACATGAAAGGCAGTTTCCCATCACAATCATAGCAGTTCTCAGTTCTGTGTGATTTAGCCGTGGAAAGTCTTGTTTGGTTGCAGCAGTCTGATCGACCATGATGTTTGTGAAAGGCCTGTGTCGCGTCAATCATGGCTCAGCCATTGCAAGGGAATTGACAGCAGGCAATCGGAGACACATAAAACCAATCTCAGTTCCATTCTACAGGCTCGTCACAACTCGTTATATACAGAGTGCATGACAGTGTAATACACAGAGTAATAACTGAAATGACACTTGCATGGAACAaacaagagagaaataaatggtTTCTGCACCTTACTTCATTAGGCTGTAATGAAGTGCAAAAGACAAAACACGCCTGCATCTGAACATATTCTAGCGGAAAAAATTATGAGGTTAGATGGAATTCAAATctacatgaaaaaataaacttctCAATAAACTGGGATGTTAGTACCCTCAGGTCATGTAGAAAACTTTACCAGTGAAGAGTAGAAAGCACAATGAATTGAGATTTTCCTCTAGACAACTAAAGAGAACCTAATGGAATGAATGGAGAATAAGACATctctaaaaatacattttaaaataattggaCCAAATATGCACATACAAAACATCTAACAAAAAGCTGTATGATTCCCActgttatacattttataatgtcaTATTTGTCTATTTCTCATCTGCCAGTGTGTCTACACTAAAACCTGCTCTTTAGCCCTAATAACCACAAAttccaacaaacacacatatatgcacacacattataaatGTAATTGCAAGTACTCTAtcaccaagtgtgtgtgtgtgtgtgtgtgtgtgtaaaacaACAGTGTCTAAAATGGCATCTGGCATTTTGAAAAACTCTAAAAGCTGCTGCCCAGATTTAATCCTGAGGCCTTTGCCTTTACGCTCTCTCAGCTCCCTCAGGTTCTGTTTGAGTCGGAAGCTAGAATGAGTCTAAGAAATGGCATGGGGTCTCATAGGGGATACAGAATGTGGGGTTGGGGTGGCAGAAAGAGAGGAAATCAGACtgagagaaagggggaaaaaacgtATGAGTCTAAAACACTGATAAAATGTTCCTGAGCAATGATCTGTGTCAGAGACCATTGAAAGCGACTGAAGTGAAAAGATGAGAATAAATTGGCTGCTTTTCACAAATAGAGAAATGGCATGACGTCGTTTCACTGTGAAAACGACCCTCTCACATAtgaaaacatgcacaaacacacaccttcaaaAGCCCACAACACCACAGAGATTCTACTGCACTTAGAGCCATGATTTAAGGGACACCGACACACAACCTGCCTCATGAATGACCTtcgtttgtgtttgttttggcaAGTAATTAAGGGTAGATGTACGTATAATAGCTAGCTATGGGTGGTCTGGCTGTACGTTGCCATGGAGACCATGGTGCAGCAGTGCAGGGGAACCTCCTCCTGAGCATAAAAAGGGACTAAAACAGGAACAACAGTAATAAGTTAAATATCACATAGCAGATATGAGTCAGAAGTCCTATCTGCAGTCAGTCAATTAGAGGTGAGAAAGGGTTCCCTCCATCTCCGTTtctgtgcatctctctctcgcCTTCTTCGGCTTTACTTCAACATGTGGGTACATTTCATGGGCTGGGAGTCTCATTTCTCCAATCAGACTGCATCCTTGCTCCACCTGTCAGTATGTGACCTCCGCCATGTGGGTTGCGTGTGTCCGTGGCTTAGTCCTGGCGGAGGCCAAAGCTCAGGAATCGGGGATGAAGGGTAAAGGTCAGATGCACGTAGCCGGCTGTGCTATTGGCTGCTGCTTACGGTTGCGCAGCCCTCCAGATTTCTCCTTATAGCCCACACACAACTGCTGAGACACGTCCACCAGGGCACTCGCTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58192 lncRNA upstream 213834 19400651 ~ 19400883 (+) True G49214
TU58135 lncRNA upstream 269374 19341355 ~ 19345343 (+) False sfxn5a
TU58126 lncRNA upstream 319424 19295082 ~ 19295293 (+) True G49157
TU58109 lncRNA upstream 347128 19266545 ~ 19267589 (+) True G49146
TU58106 lncRNA upstream 357557 19256096 ~ 19257160 (+) False LOC113539574
TU58551 lncRNA downstream 295504 19912821 ~ 19954595 (+) True G49522
TU58539 lncRNA downstream 315725 19933042 ~ 19943075 (+) True G49517
TU58541 lncRNA downstream 355270 19972587 ~ 19999686 (+) True G49518
TU58721 lncRNA downstream 503731 20121048 ~ 20183193 (+) True G49630
TU58738 lncRNA downstream 538584 20155901 ~ 20191144 (+) True G49643
XM_026933276.2 mRNA upstream 10530 19516321 ~ 19604187 (+) True gfra4a
XM_026933896.2 mRNA upstream 188396 19412671 ~ 19426321 (+) True ap5s1
XM_026945763.2 mRNA upstream 204626 19402932 ~ 19410091 (+) True cdc25b
XM_026945771.2 mRNA upstream 204626 19402935 ~ 19410091 (+) False cdc25b
XM_026932072.2 mRNA upstream 260037 19341350 ~ 19354680 (+) False sfxn5a
XM_026933336.2 mRNA downstream 157430 19774747 ~ 19786571 (+) True ky
XM_034301788.1 mRNA downstream 303838 19921155 ~ 19934237 (+) True LOC117596472
XM_026935755.2 mRNA downstream 315738 19933055 ~ 19970306 (+) True fgfr3
XM_026935745.2 mRNA downstream 315739 19933056 ~ 19970306 (+) False fgfr3
XM_026935766.2 mRNA downstream 315739 19933056 ~ 19970306 (+) False fgfr3
XR_003403773.2 other upstream 258619 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 957656 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 1388133 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 2404090 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 3167011 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 3496868 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile