RNA id: XM_026943527.2


Basic Information

Item Value
RNA id XM_026943527.2
length 2796
RNA type mRNA
GC content 0.50
exon number 21
gene id slc4a11
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19716600 ~ 19768134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCGCGTGCTGTCACGCACACCTGCGAAACACCCGCGCGCCCCCGCTGTGCTCACACTGAGGGGAAGAGGGTAGGTGACGCAGAGGGCAGTTAAATGTTTGTTAAGAGGATGTTTTGAGGAAAGATTTGAGGGAAAGACTTTCCCTGGAACTTTTCcttggagaattttttttccccaaaactgAAGAGAAGATGAAAACTGACAGAGACGGAGGAGACATGAGGGGAGTGACCGTTAACAGATTCGTGGAAGAGGCTCCTTCTGCGGTCATGGCCAAGAATGGATACTTCTATCAGGAaatggAGGGAGCGAGACGAGCAGGAGGAAGGGAGTGAGGATCGGGAGGAGGGTCAGGACTCTCCTATCCCATCAGGAGATGACATTCATCTCTACGGCAACCAGACACACCAAGGAGGgacagATTCTGATGTCCATGGCTGTGTCTTGCTCAATACATCACGTAGAtATGTAAAGCTGATGAACTTTGAGGAGGAGGTGAGGGCTCACAGGGATCTGGATGGCTTTCTGGAGAGGGCGAGTATTCTGCTGCACGAGGACGAGGCGTCGCTGGACGACGTGCTTAAGACGATGCTCCGGCACGTCTCGCAGGACCCACACACGGCCGAGCCTAGCTGCAACTTCGAGGAGATCATGAGCTCGCTCTTCACCGATGCCGGCTCACAGGAGGTCAATGACAGGTCTCCCAATTTCCTTTTCTATGATAAGGTGCACCTGCTGTCTGAAACCCTGCAGTGTGTGACAGCTACCGCCACGGGCATCCAGTACCAGCAGTCTTGGCTCTGCATCCTCTGCAATGTGAAGAACTTACAAAGGCGGCATGTTTGCATCTCTCGGTTGGACCGGCCTCAGAACTGGGGGGAGAACTGTGCCGAGGTCCGCTACGTCATCCTTATACTTGCACCTCTTAAGATgAAAAGCACTAAGACAGCCATGGAGCTAGGCCGGACGTTTGCGAGCATGTTCTCTGACATCTCATTCAGGCAGAAACTGCTGGAGAGTAAGACTCCAGAGGAGTTTAAAGAGGCACTGGTCATTCAGAGGTACCACCTGACTGCTGCCAAGCGAAAAACTACCACTGTTGAGGAGGAAGAGACTGACCCACACAGCCACAAACCACTCAAGTGTAGAGATTTTTTCAGAGTGGGCAGAGGCATCTATGAGGATCTGTGTCGCCGCCTGCCCTTCTATATATCGGACTTTACTGATGGAATAGTGGGCAACAATAAAGCACTAGTGAAGTATATGACAACGTCCATTTTCCTCTACATTGCCGTTCTGCTTCCTGCCATTGCATTTGGCTCACTCAATGACGAAAGCACAAGAGGAGAAATAGATGTTCAGAGGACGATCATTGGGCAGAGTATAGGTGGAATCATCTATTCACTGTTTGCTGGTTCGCCTCTGGTCATTCCCCTAACTACTGCACCTATCGCCATCTTCATCAGCGtaatCAGAGGGATCTGTGATGATTATGAGCTGGATTTCAGTGCGTTCTATGCCTGCATTGGTTTGTGGAACAGCCTGTTCCTCATCATTGGAGGGGTCTTCAACCTCAGTCTACTCGTTAAGCTCTTCAAGAGGTCGATAGAGGAGGTGATAGCTCTGTTCATTTCAATTGCTTTTGTAGCAGATGCTGTTAAAGGCACTGTCAAGATCTTCCATAAGTATTACCATCCTCCTACATTGGCCAATGGCAGCATAGAGGAGTTGCATCGAGTAAGTGGAGGGTTGAATGTAGGGGAGATGAACTTCACAGGGGCAGGGTTACTGTCGCTCCCAGAATCCTTCATTTTGTGCACACGAGCACGGCCACTGCTTTGCCTCCTTCTTATGCTTGGGACCTTGTGGGTCGGGTACACACTCTACCAGTTTAAGAGAAGTCCCTTCCTGCATGCGAAAATGAGGGAGATTCTGTCAGACTGCGCTCTGCCCATCTCTGTGCTCATTTTCTCCTACGTTGGCTCCTACATCTTCAGCGACATTGGCTtgCCCGTGTTTAACTATCATGAGGGTTCACTGTTCCGAATGGCCGCTTTGGAAAAGCTATCAGGAGTCAGTGTGGTATGTGCCATGGGGCTAGGCTTCCTTCTTGCTCTCCTCATCTTTATTGACCAGAATATCGTGGTGTCCCTGACCAATGCCCCAGAGAACAGGTTACTGAAAGGTACAGCATATCACTGGGACCTGACATTATCTGGCCTGATTAATATTTTGATGTCGTTGCTTGGTCTGCCTTGGATGCATGCTGCTTTTCCTCACTCGACGCTGCATGTGCGGCAGTTGGCCATTGTGGAGGAGAGGGTGGAAGGAGGACACCTTTATGAGACtattgtAAGTGTGAAGGAGACCAGGGTAACATCACTTTTGGCAAATATCCTGattggtgtgagtgtgttcctGCTGCCTGTTCCACTGCAGTGGATTCCCAAACCTGTACTCTATGGCCTCTTTCTCTACATTGCCCTCACATCCATCGATGGCAACCAGATGTGTGACCGCATGGCACTTCTACTCAAAGAACagACGTCCTACCCCCCAACTCACTACATCCGGAAGGTACCACAGAGGAAAATCCATTATTTTACTTTCCTTCAGATGGTGCAGCTGCTGTTCCTCTGTGCGTTTGGAATGTACCCACTCCCATACATGAAAATGATCTTCCCTCTGCTAATGTTTATCCTCATACCTATCAGGAATTGTCTGCTGCCCAGGATCATTGAGGCCAAATACCTGGACATCATGGACGCACAGCACATGTAAACATGTgcacctc

Function

GO:

id name namespace
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58495 lncRNA downstream 1180 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA downstream 1180 19714418 ~ 19715420 (-) False G49484
TU58488 lncRNA downstream 27723 19688592 ~ 19688877 (-) True G49481
TU58214 lncRNA downstream 287875 19427746 ~ 19428725 (-) True G49232
TU58193 lncRNA downstream 315737 19400664 ~ 19400863 (-) True G49215
TU58636 lncRNA upstream 127564 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA upstream 190310 19958444 ~ 19964311 (-) True G49584
TU58693 lncRNA upstream 252553 20020687 ~ 20025664 (-) True G49606
TU58688 lncRNA upstream 296122 20064256 ~ 20064511 (-) True G49605
TU58757 lncRNA upstream 412944 20181078 ~ 20184289 (-) True G49661
XM_026941796.2 mRNA downstream 3094 19701079 ~ 19713506 (-) True rpia
XM_034302993.1 mRNA downstream 16478 19669405 ~ 19700122 (-) False eif2ak3
XM_034302992.1 mRNA downstream 16478 19669405 ~ 19700122 (-) True eif2ak3
XM_034302619.1 mRNA downstream 48941 19614717 ~ 19667659 (-) True atrn
XM_034302620.1 mRNA downstream 48942 19614717 ~ 19667658 (-) False atrn
XM_026939218.2 mRNA upstream 19610 19787744 ~ 19807623 (-) True c3h20orf194
XM_026943999.2 mRNA upstream 42001 19810135 ~ 19813866 (-) True cfd
XM_026933670.2 mRNA upstream 73593 19841727 ~ 19844357 (-) True foxi2
XM_026936642.2 mRNA upstream 228735 19996869 ~ 20032845 (-) False letm1
XM_026936636.2 mRNA upstream 228735 19996869 ~ 20032845 (-) True letm1
XR_004577815.1 other downstream 48939 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 396867 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1103199 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2055216 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2142178 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 589800 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 589854 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 589854 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1843640 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 2128050 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile