Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU58495 |
| length | 1256 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G49484 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 19714165 ~ 19715420 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0060089 | molecular transducer activity | molecular_function |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58488 | lncRNA | downstream | 25288 | 19688592 ~ 19688877 (-) | True | G49481 |
| TU58214 | lncRNA | downstream | 285440 | 19427746 ~ 19428725 (-) | True | G49232 |
| TU58193 | lncRNA | downstream | 313302 | 19400664 ~ 19400863 (-) | True | G49215 |
| TU58155 | lncRNA | downstream | 462302 | 19251593 ~ 19251863 (-) | True | G49184 |
| TU58066 | lncRNA | downstream | 523550 | 19190327 ~ 19190615 (-) | True | G49108 |
| TU58494 | lncRNA | upstream | 32274 | 19747694 ~ 19751354 (-) | False | slc4a11 |
| TU58636 | lncRNA | upstream | 180278 | 19895698 ~ 19970294 (-) | False | G49584 |
| TU58643 | lncRNA | upstream | 243024 | 19958444 ~ 19964311 (-) | True | G49584 |
| TU58693 | lncRNA | upstream | 305267 | 20020687 ~ 20025664 (-) | True | G49606 |
| TU58688 | lncRNA | upstream | 348836 | 20064256 ~ 20064511 (-) | True | G49605 |
| XM_026941796.2 | mRNA | downstream | 659 | 19701079 ~ 19713506 (-) | True | rpia |
| XM_034302993.1 | mRNA | downstream | 14043 | 19669405 ~ 19700122 (-) | False | eif2ak3 |
| XM_034302992.1 | mRNA | downstream | 14043 | 19669405 ~ 19700122 (-) | True | eif2ak3 |
| XM_034302619.1 | mRNA | downstream | 46506 | 19614717 ~ 19667659 (-) | True | atrn |
| XM_034302620.1 | mRNA | downstream | 46507 | 19614717 ~ 19667658 (-) | False | atrn |
| XM_026943527.2 | mRNA | upstream | 1180 | 19716600 ~ 19768134 (-) | False | slc4a11 |
| XM_026943495.2 | mRNA | upstream | 1180 | 19716600 ~ 19768134 (-) | False | slc4a11 |
| XM_026943511.2 | mRNA | upstream | 1180 | 19716600 ~ 19768133 (-) | False | slc4a11 |
| XM_026943503.2 | mRNA | upstream | 1180 | 19716600 ~ 19763473 (-) | False | slc4a11 |
| XM_026943535.2 | mRNA | upstream | 1180 | 19716600 ~ 19763470 (-) | False | slc4a11 |
| XR_004577815.1 | other | downstream | 46504 | 19635838 ~ 19667661 (-) | False | atrn |
| TU58169 | other | downstream | 394432 | 19316487 ~ 19319733 (-) | True | G49195 |
| TU57664 | other | downstream | 1100764 | 18330368 ~ 18613401 (-) | True | lrmda |
| TU56951 | other | downstream | 2052781 | 17657581 ~ 17661384 (-) | False | col13a1 |
| XR_004577787.1 | other | downstream | 2139743 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| TU58944 | other | upstream | 642514 | 20357934 ~ 20369097 (-) | False | gng2 |
| TU58943 | other | upstream | 642568 | 20357988 ~ 20369097 (-) | False | gng2 |
| TU58946 | other | upstream | 642568 | 20357988 ~ 20369429 (-) | False | gng2 |
| TU59887 | other | upstream | 1896354 | 21611774 ~ 21614267 (-) | False | plekhh2 |
| trnai-uau | other | upstream | 2180764 | 21896184 ~ 21896277 (-) | True | trnai-uau |
