RNA id: TU58539


Basic Information

Item Value
RNA id TU58539
length 2351
lncRNA type read_through
GC content 0.42
exon number 3
gene id G49517
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19933042 ~ 19943075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGCGAGCGCAGCACTCACAGCGGGGACGCGGTTTGAAATCTGATCcgggctaatttttttttacccccctcctcctcctcctcctcctcctccagagtCCGGGGCTCCAAACTGTTTAGCGGGAGTTGGTGAGTCCAGCAGTTTCACACAGAGGAGCACCCGAGCAGAGTCAGGAGCTCACATCAGGCAGCCCGCGCACCTCCGCCACATTCCCCGCCGGTTAGTGGGACGAGGTGGACTGTGTACTAACTGCGGCTTTCTGCTCAGCTCACACAGCCACACCGGGCGGACAGACGAGCTGAAGTTTATCTGGACTGCCCCGTAAGGAAGAGCTGAACACGGCTGATCTTCAGTGCATCTTGACGGATCCATTGGACTATTCATCTTCACAAAGAAGCAGCTGTGCAACTTCTAGTGATTTCTAATAGCTGAGGATTACTGGCACCAAGAGAGCTTGTCGgGTGGCAAGTGGACAGGGGACACCTGTGTGAGAgtgcttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagcacTACGTTGACATCATGTGTAGGACTGTGGAAGATGTGTGAGTCTGGTGTCCGTGGCGAGGACCCTGGGCCACAACGGACCCTGGCTGGGATGATGGCGCTTTGCCTTCTCCTCTACCTCTCCTCCATCTTCCCATCAGTGCACAGCGCTCACCTGCCCTCAGCACAGCCCACAGGGGAGTAAAGACGTGACGAGAAGAATCGCTGCTCCGCTCTCAATATTTATGATGCAGATGCACACAAAAGAAAGTCATGAGTGAGGGAGTCGTGAGTCAATCAGTATGGCAGTCTGATACCTCAAATACTTGTCTTTTGAACTTCCATTATACTAAGTaaaattttctgtaacactgtTTGTTTCTACTTTCCCCTCTACACTTCCCTGTTcctgtcagttccagtgaaggaggcgtgtctgGTCCTTGCACTCCAGAGCCAACTCTTTTCCTTCTCTATCAAATGCgtctgtagtgtgtgcagtTATTACAGATAAAAAATGGGAAactgagaaatgaacagaaaccTGTTCAgtcaaaactcacttataatagAAGTCTAAGGACAGTTGTTGCTTTCTGTCAGTAGTAGATTCTTTATTATGTGACAGTATAACATGATTTGGAGACTATAACTGTTACACAAACCGTCCTTCgaaagagacagacatgagCCCTACCAAAGCTGTTTTTACTGTATGCCGTTTTATCCAACTTTCCCAGACAGCAGCAAAACAGTACAAAGCTATTCAGATTACTTCCTGTACACATTCTCCAAGGGTTTGTGGTATCCATCAGGCAAAAACCTTTGTGatactttttgtttattttaagctACATTGGCTATATTCTAGTAACACATAAGGATGGTTTTACCGTCTGAAAGAGTAGTCCCGTCTCTGAAAGAAGATACATATTTAGGACATAATATACTAATATCtttgaataaattattcatGAAAGTGTtctacaaaaatgtgttttgaacaGAGGCTTATTGCAACCCCAGCAGCTGCCCTTaaacttccattataagtgagatGTAAGTAAACAGGTTTCTGGTGAACTGTTGAAATTATTATGTGGTAATTGCACATATGCTACAGGTGTGGTAGATAGAAATTAAATTGGAAGACAACACTGGAGAAACATTCGAGACTTCGTTTCTATGAACTATCGAACTGTTTGCATAATACCTAATCAGTTTATATAACATTGAATTGCACATGGAATTACATTGGCACTGCCCTAAATTGCATCATATTGAATCGCTCTCTGATTTACATGTTAATGTATCATTCATATATTAGATCTTTTATCTCAGAGTGAGAGATACACTCCTCCTACGCGCACATAAGCAATATATTCAGAGAagcatttatgaatataataaatcaCCAGTCATTTTAGCAAATCATAATGTACACAGATTTCGTCGGGATAAATACATTTGGATAAATAATGTTGCCACTACGGTTCAGGGTCGATTCCTTGCTGTGTTGTGGACCCCCAAGAGTGCATGTATGCTCATCATCAGTGTAGAGGAATGTCAATAAACTATACATCAGTAAACtatctcttttttcattttagctGCCTGAACTGTGTAATTTGTaggtaaattatataaataataaatacagagcGTATAAGGCACATGAGTGTTAGTAATTGGATTGGTTTATGTTGTTTATCAGTGGACATTGATTAAAAGTTTTTTCAGATTGGttagattttaaataatgagaAGTGATTTAAGGCTTTATCCCAGATTTGAAAGTGACCAATTTATCCATTATCCAAC

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58299 lncRNA upstream 315725 19614717 ~ 19617317 (+) False G49316
TU58301 lncRNA upstream 315725 19614717 ~ 19617317 (+) False G49316
TU58302 lncRNA upstream 315725 19614717 ~ 19617317 (+) False G49316
TU58303 lncRNA upstream 315725 19614717 ~ 19617317 (+) True G49316
TU58192 lncRNA upstream 532159 19400651 ~ 19400883 (+) True G49214
TU58541 lncRNA downstream 29512 19972587 ~ 19999686 (+) True G49518
TU58721 lncRNA downstream 177973 20121048 ~ 20183193 (+) True G49630
TU58738 lncRNA downstream 212826 20155901 ~ 20191144 (+) True G49643
TU58889 lncRNA downstream 449292 20392367 ~ 20392587 (+) False pprc1
TU59001 lncRNA downstream 580741 20523816 ~ 20524049 (+) True G49853
XM_026933336.2 mRNA upstream 146471 19774747 ~ 19786571 (+) True ky
XM_026933276.2 mRNA upstream 328855 19516321 ~ 19604187 (+) True gfra4a
XM_026933896.2 mRNA upstream 506721 19412671 ~ 19426321 (+) True ap5s1
XM_026945763.2 mRNA upstream 522951 19402932 ~ 19410091 (+) True cdc25b
XM_034303067.1 mRNA downstream 99634 20042709 ~ 20064115 (+) False nsd2
XM_026944793.2 mRNA downstream 99637 20042712 ~ 20064115 (+) False nsd2
XM_026944785.2 mRNA downstream 100049 20043124 ~ 20064115 (+) False nsd2
XM_034303066.1 mRNA downstream 100049 20043124 ~ 20064115 (+) False nsd2
XM_026944803.2 mRNA downstream 100295 20043370 ~ 20064115 (+) True nsd2
XR_003403773.2 other upstream 576944 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 631898 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 1062375 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 2078332 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2841253 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 3171110 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile