RNA id: TU58738


Basic Information

Item Value
RNA id TU58738
length 2173
lncRNA type read_through
GC content 0.36
exon number 2
gene id G49643
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20155901 ~ 20191144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCAGCTCAATAATTACACTCCCAAATGGCTCATTGGTAGTGTCAGGCCAAATTTGTTTATGTTTGCTTACCCATCGTTCAGTTAAATCTTATTCTACCCTCtgattaacaaaataacataaaCTTTGCATTATGCTTattataaaatctttttaaataaacacaaaaccagCAAGTTGTTACATATTTGCTTTTTCAAACCCAGTAAGCATTGCTgcattaatattagtattaattattattaacagctgttttaatgtttaataaaaattcaaggatttttgtgcttttatgCTGATTTCACCTTCCCAATCTATTACACTACATATATCATTATAACAAGCAGCAGCGCAGTCAGCCCATCATGCTGTTTCAgtcacacataaacacacacagtcaaagaTATGCCTTAAACGTCTCACTAGAACTGGCTCTACATCATTATGCTGTGGCAAACAACGCAGGTGTTGATAAGATTCACTAAATGCACTTCAGCCATGGTTACAATGAATGAGATAAAAGGTATCAGAGAATCATGAATACACAATACTGACAAAATTTCAGCAGAAGTATACGTTACTGATCATTAGTTATGAGAGTCGACTCCAAATGTCCAGCTAAAAGAGTTGGCTCAACGAGTTGACCCTTTCATGAACAACATATCACTACTTCATAACTGCTTCATTACCGTCTCAGTTAAAGCTTCTGTAGCCAACTGTTTATAGACcagcacacacagctcactCTTAGTTATAGATGGAAGAGTAGTATGACAATTGATTTTAATTAGTTTCCCCCTCAAACATATACAGCACTGAGAAATACAACACTGTGGTAGAAAGAATGCCTAAAACTGATCTTGATTTGGTTTCCCATTTCAACAGTTTAGTAGAAACTGTTTTCCTCTTAAGACAGTGTTTCTCATCAATTTTACTTTTGCTGAAAAATAATATGTAACCTTTTAATCAGCATGATCAATAAGAGGTTGCCTTATGTTGTAGCATGTAGATATTGTTTATCTGAGGACACAGCTAGCAAATACCACTGTGGGCAAAAAAATTCACGGTGGGCCAGTGCTTACacctaaaacacaaactagtctgtgctgttattttttgttagttttgcaTTCAGAGCTCATCCTGGGGTGACACTGTCATCAATCAGATCTCTTTGCGTTTAAAAGTTAAGATTAAATGTTCAAGAGCctattgccatttttttttagagaaataaatgCAATCCACATAAATCTACTTTATTTAAAGACCTAGTGATAATGTTCGGCCTAGGTTGTATCAAGTTAAAACCAATTACATTCAGACAATAATAAATCATCtattacagtataattaaaGTCCTATATGCTACCATTCTAACAAGGAATGTaaaattcaaaaaatatatataaaataaaaacacatactgAATTGCAAAACCCCaaatttaataatgttaatgctgAAAGAAATAAGGCAGCCTTTTGAAGATTTGCTTGATTACATGGAGGGCTTTATACCACCTTCATGAAATGTTAAGataaaatctgaataaattaaaaatgtgttcattagGCACTATTGCAGCAAGGCTGCTGGATAAGGGCACACAGATAATTCCTTTCCTCAGCCATTAAATAATTcaacacatttgtttaaaaaggaaCACACCAAATATTTTACAATCTCTGAGTCCTGTTTAACAATGAATATGCAAGTTTGTTCAAGTCTTTTTTGATGAGACTGTCAATATGTTTGAATATTTGAGTCATCGTAATGCTTTGCTGTTTTTGCTTAGATGGATTTGCTTGGTTTGAGTTAACACTTGTAGTGTATTACATGCTGAGCTCTTCGTAAGTTGCTGAGGTGGATGGGACTTTGTAAGGTGTTTTCTTTAAAGGTGTATGGGGGAGTTAGAGGTTCCTGTTGGGGCTCAGAAGTAGTATTGGCTGAGGGTCTGTGGTATTTTGAGGGAGAACCTGTTAATTTGAAGCTTTGGTTCAGGGCAGAAAGGAAAAGTGCATGAgaaggagagggggagagacaaAGGGAGAAGTGGGGGAGATGgggagggcgagagagagcgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacgcagcgATGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58541 lncRNA upstream 156215 19972587 ~ 19999686 (+) True G49518
TU58551 lncRNA upstream 201306 19912821 ~ 19954595 (+) True G49522
TU58539 lncRNA upstream 212826 19933042 ~ 19943075 (+) True G49517
TU58302 lncRNA upstream 538584 19614717 ~ 19617317 (+) False G49316
TU58889 lncRNA downstream 201223 20392367 ~ 20392587 (+) False pprc1
TU59001 lncRNA downstream 332672 20523816 ~ 20524049 (+) True G49853
TU59014 lncRNA downstream 389657 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 394460 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 428794 20619938 ~ 20716297 (+) True G49857
XM_034303067.1 mRNA upstream 91786 20042709 ~ 20064115 (+) False nsd2
XM_026935332.2 mRNA downstream 4330 20195474 ~ 20205571 (+) True enpep
XM_026933582.2 mRNA downstream 21316 20212460 ~ 20214679 (+) True lamtor3
XM_026936694.2 mRNA downstream 67592 20258736 ~ 20261786 (+) True commd8
XM_026945692.2 mRNA downstream 191202 20382346 ~ 20392601 (+) True pprc1
XM_026932427.2 mRNA downstream 204613 20395757 ~ 20407070 (+) True oga
XR_003403773.2 other upstream 799803 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 383829 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 814306 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1830263 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2593184 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2923041 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile