RNA id: TU58804


Basic Information

Item Value
RNA id TU58804
length 778
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G49700
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20215653 ~ 20216430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aattatccaaCATTAATTATCTTTTTCAGAAAAAGTATGCAAATCTTTGCTTTCAGTAACTAGTGTGACCCCTTTGAGTAGCAATAACTTCAACCaaacattttcagtaaatgGTAATCAATCCTGCCCAACGGGTTGGAGGAATTTTGGAGGAATTCCTCCTTATAAAACTGCTTCAActcagtggtggtggtggaccTGCTTGCATGGACTGATCTTTTTAGgtccttccacaacatttcCTTTGAGGTCAGGTCTGGACTTGGGCATTGCAAAATATTGATATTACTCAGTGCAGAAGTGGCCTGTAGGTCCTTAGCTGTTACCCTGGGGTTCTTTGTGACTTCCTGTAATATTATTAACTGCACCCTTGGAGTGATTTTTGCTAGATGACCACTCATTGGGAGATTAATATTTGTGCTGAATTTCTTCCATTTGTATATCATCTCCCTTGCAGTGAATTGGTGAAGGCCAAACTCTTTAGAAATAGGAATGTCTTTTGATTGAGGCATGGCACACGCAATAAACCTGTGTAGTGAAGACCAGATTTTGATAGTGAAGACCCAGgtttatgttcatgaaacaTGGGAGGGCCTGCTAAACTCATGCCTGATTGCTATCCCCTTGATTGAAACACCTGACTTCAATTACCCCTTTAAGTTAACTCATACTCCtagaggttcacatactttttccgataaagatatttaatgttggataattttgctcagtaaataaatgtaaaatgtcatttgtttaattgggttctctttatCTA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58755 lncRNA downstream 10060 20182053 ~ 20205593 (-) False metap1
TU58757 lncRNA downstream 31364 20181078 ~ 20184289 (-) True G49661
TU58688 lncRNA downstream 151142 20064256 ~ 20064511 (-) True G49605
TU58693 lncRNA downstream 189989 20020687 ~ 20025664 (-) True G49606
TU58636 lncRNA downstream 245359 19895698 ~ 19970294 (-) False G49584
TU58849 lncRNA upstream 8536 20224966 ~ 20227579 (-) False atp10d
TU58921 lncRNA upstream 80688 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA upstream 132980 20349410 ~ 20351476 (-) True LOC113537651
TU58937 lncRNA upstream 247463 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 256047 20472477 ~ 20473295 (-) True G49836
XM_026935353.2 mRNA downstream 6361 20205863 ~ 20209292 (-) True rrh
XM_026935343.2 mRNA downstream 24573 20182158 ~ 20191080 (-) True metap1
XM_026945047.2 mRNA downstream 55109 20157144 ~ 20160544 (-) True eif4eb
XM_026932676.2 mRNA downstream 65078 20127747 ~ 20150575 (-) False lingo2b
XM_026934187.2 mRNA upstream 786 20217216 ~ 20223681 (-) False dapp1
XM_026934180.2 mRNA upstream 786 20217216 ~ 20223681 (-) True dapp1
XM_026939078.2 mRNA upstream 8479 20224909 ~ 20256520 (-) False atp10d
XM_026939085.2 mRNA upstream 8479 20224909 ~ 20247606 (-) False atp10d
XM_026939092.2 mRNA upstream 8479 20224909 ~ 20246823 (-) True atp10d
XR_004577815.1 other downstream 547992 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 895920 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1602252 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2554269 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2641231 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 141504 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 141558 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 141558 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1395344 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1679754 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile