RNA id: TU58849


Basic Information

Item Value
RNA id TU58849
length 2393
lncRNA type sense_over
GC content 0.39
exon number 2
gene id atp10d
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20224909 ~ 20256520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACATGGCTCCATGCAGCGGTGTTACTAGGCAGTGGCATCTTCTACTATGTGTTTGTCCTAGTGTTCAGTGTCACATGTGTGACGTGTAACTCTCCCACAAACCCATTTGGCATTGAGACTAAACTGATGTCTGAGCCactgtattactgtgtgtgtggactcaCTACTGTCCTAGCACTGCTgcccagGGTGCTATGTCGTGCATTCTCTAACTCCCTCTGTCCGTCTGACTTGGTGAAGGCTCAGAAACTGGACAAGTCCTCCACAGGGCAGTATTGGAGCAATAGCCATCACTGGAAAGAAGACAAACCTGCcaaacaaaaattgaactcCAGGCCCATCCCTCAGACTCTCAATGTGAATGCTGACATGCCCCACTTTGCAAACTGCAGTTCAGAGATGGGCCCTGTACCCTCCTGATTCATGATTCAAAAAGCTGCCTTAATACTGAGAAATTGTCCACATTGTACTTTTGAGACAAGCAAAACCAGACAAATCTCCAAACTGGCTTTGCTCTGACTAATGTGTTTACTGTCACTGACATCCCTCCACATTCTCGTCTTTTCTTATCAAGACTACACCCATTAGCCATACCTATTTTACATATCCGTATGTACATTCTCTGTTGTGGAATGCCTCGAGAAAGCACTCAACCCACATCGTTTTTTCACACAGAATAAAAAAGTCGGAATAATATCAGAATATCTGAAACAGACATAAgtgtgatttgaaaaaaaagggggaggagGCCTTCTTCACAGAACAGTAATGCTCCATATGCTTcaatatacttttaaaataggagtatattgtgaaaatgttcataCTTTCAAGGTTGGACATGGTTTTGTTGGACAAGGTTGGTGCTTGGTTTTAGGTCACTATGCTATAATAAAAGTCACTAAATACTAAAATGCTGAACAAACAGGGCACTTGTCAGAGAAGCTGCTGTAAGAACTGTGACTCCGAATGAGTTTCAGAAGACAGTGCTTTTAAGAGGAGAAAATGAGTTGCATCAGATTTGCTCCTGCTTGGCTGTAGAGAAGACTTGCTGCCACACTGGCCCTAGCTGGATAACATTGTCTATCCCTGATCTAAAAGAAACTACAGAGAAACCAGTGTTTTGGCCTACATGCAAAGTGACCCAGATAAAGTGGTTCCAATCTGATATCACCAACGGTGGAAGATATGCCTATGTAGTGGCCTGTTCTTTAGCAACACAAACAGGAACTGACAACTTTGTTAGGAatgatgtttacatttacatttgcagcaTTTGGTAGAAGCCCTTAGAAGTGTTTTAGTTTCCATCAAAATCATATTCTAGTACATGAAGGTCTAATAATACTTAGCTAAAATCCTGGCAGACAAGAGTTCAATTGTACAAGAGTACAATGAGTTagtacagaaacacaaacagtacAAGCCAACGTTTTTTAGTGCTCCTTGTTGAAGCAAATGTTACACATTTCAGAGAGATTCTTACCAAAGGCCAAACAAACAACTGTTGAAGTTTGTCGTTCAACACAAGCATATTTTAAACCAAGGTTTAATAAGATTCCTGTCCTGCAGAGGTTTTTCTACTCCCGACACACCTCATCCTACTTATAGAGAGATGCATAACCTATGCAGGGTGATGGGCCTCCAAACCACGCCGCATAAGCAAAACTGGACTTTCAGAGGCTTTGAAAGTTTTAACTGAGTATTAAGTTTGGGGACATAAATACCAAttgagtacttttttttttaaagaactgtATGTACAATCATTTACTTGTGACTGCGCAATATGAACAAAATGCTATAATGTGAAATAGTTTAACTGGGATATGCCTTGTGActtaaatgtttacataaatgttaacattCATCAACACACCCTATAAAACATCTGGGTCAGGAAGTTCACAGCAtacaataaatcatttaatcatttgttaGAGGGCTCATTTGTATATTGCAGCCTTCTGCAGTACCAGTGTTTCAATATTGTAATATCAATTAACATTCATGTTGTTCAAATCATGCAGTAAGTGTAAAACATGCTGTTGACTGAattgttcactttttttctATAGGCAGTGCTAATGTCCTGTGCAGTTCAGTGATATTGAATTTTGAAAGGATTGTAAGAAACTGAGATGAATGTCtttaaaacagttttctttGCAGTGAATGATGTGTGTTGatctgtgattattatttaaaataagtaatCAAGAATGAGTGGTTTGACCAAATGTGATGCTTGACCATGTGATTTTTTTGACTGAATTACCTGTtgaaaaattgtgaaataattttgaaaaattcaaaatgttacATGTTTTGGGATTGTTTTTGTCGGGttctgtgtgtattgtatacTTTTGAAAGAATTTCTGATGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58804 lncRNA downstream 8536 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 19373 20182053 ~ 20205593 (-) False metap1
TU58757 lncRNA downstream 40677 20181078 ~ 20184289 (-) True G49661
TU58688 lncRNA downstream 160455 20064256 ~ 20064511 (-) True G49605
TU58693 lncRNA downstream 199302 20020687 ~ 20025664 (-) True G49606
TU58921 lncRNA upstream 69539 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA upstream 121831 20349410 ~ 20351476 (-) True LOC113537651
TU58937 lncRNA upstream 236314 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 244898 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 250129 20477708 ~ 20478688 (-) True G49841
XM_026934187.2 mRNA downstream 1285 20217216 ~ 20223681 (-) False dapp1
XM_026934180.2 mRNA downstream 1285 20217216 ~ 20223681 (-) True dapp1
XM_026935353.2 mRNA downstream 15674 20205863 ~ 20209292 (-) True rrh
XM_026935343.2 mRNA downstream 33886 20182158 ~ 20191080 (-) True metap1
XM_026945047.2 mRNA downstream 64422 20157144 ~ 20160544 (-) True eif4eb
XM_026936659.2 mRNA upstream 34456 20262035 ~ 20279042 (-) False gabrb1
XM_026936652.2 mRNA upstream 34456 20262035 ~ 20279042 (-) False gabrb1
XM_026936667.2 mRNA upstream 34456 20262035 ~ 20278274 (-) False gabrb1
XM_034302741.1 mRNA upstream 34456 20262035 ~ 20274697 (-) True gabrb1
XM_034302742.1 mRNA upstream 36370 20263949 ~ 20279042 (-) False gabrb1
XR_004577815.1 other downstream 557305 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 905233 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1611565 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2563582 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2650544 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 130355 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 130409 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 130409 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1384195 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1668605 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile