RNA id: TU58943


Basic Information

Item Value
RNA id TU58943
length 1237
RNA type TUCP
GC content 0.43
exon number 4
gene id gng2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20357934 ~ 20369445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGAGAAGGGCTGTCAGCCAGAGTGGTGtagcagacagtgtgtgtgtgcatgtgtttatgcatgtgtgtgtggcaaaAGTGTGAGGAAGAGGGACAGTGCGTGAGAGAACATTTGGCTACTACTACTGATTTTGGAGTCTCCGagaagaaataaacagatacaTAATCTGAGAAGGCTGAAGTCTGAATAGAGGGACACAAGATTGGACCTTGAGCAGTGACATTCAAGGGGTAGAGTGAGCTGAAAAGACTGAAGAGAGATTTAAGTACTGTTCGTGTTTAAGCCTCCCAGTCCAGCAGACTCATGGCTAGCAACAACACTGCCAGCATCGCCCAGGCACGTAAACTGGTGGAACAGCTCAAGATGGAAGCTAACATTGACCGTATAAagGTGTCTAAAGCGGCTGCAGACCTGATGTCATACTGCGAAGCTCACGCTAAGGAGGACCCTCTGCTGTCACCTGTGCCTGCTTCTGAGAATCCCTTCAGGGAGAAGAAGTTCTTCTGTGCCATCCTGTAAGCAGTGATGGCTGGCCTTGGGCATGCCTGCTCCATCTGGGACCCACACACATTGATGTTAAGAACGAAAACCTTTTAGCGAGGGCTGAGGGGCAGGCGTGCAGTGACTCCTCAACCTCACCTGGTTCTCCATGCTCCCCGTGCAAAACCCCAGCATGGAGGGAGGGCCAGAGCTGTGCATGTTTACAAGGGAAAGCACAGCCAACATGAGCAACTGGCTTTACAGCAGCTCAAGCTGGATATGATGTGTAAATTGCAGTATTAATGCGGTATTTTGTGGTCCCTATGAGGtattcaaatgttttgtttgattAAATTAAGTTGATCATGATTTCGAAGCTGATCACTGAGCAAAGAACCATGGATTGCCATGGAAATGTTCTGATTTCTTCTTTGTTTGCTCTATTTCAATAATCATTGATTTCTCTTAAATGAATCTGGTATATATGACTTAGGTAGCTTTCTAtgtatgtactttttttaatttaataataatagataggTAAACGCATTTTTTTATGAAAGATTTGCACACATACAAATATTCCTAACAGATACGTATCTTTATGAAACTGATTACAACATTTGAATATGTATAGCAggcaatttaattttttgtctCCTTCAAAAAGATAGGTCTTTTTACTATTTGTAAAAATCAACTGTGTTGTGCTGTATGGTTTGAATGTCTGTGGTGATTccaataataactgcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403784.2 lncRNA downstream 6512 20349410 ~ 20351476 (-) True LOC113537651
TU58849 lncRNA downstream 130409 20224966 ~ 20227579 (-) False atp10d
TU58804 lncRNA downstream 141558 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 152395 20182053 ~ 20205593 (-) False metap1
TU58757 lncRNA downstream 173699 20181078 ~ 20184289 (-) True G49661
TU58937 lncRNA upstream 94796 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 103380 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 108611 20477708 ~ 20478688 (-) True G49841
TU59102 lncRNA upstream 130436 20499533 ~ 20500791 (-) True G49941
TU59106 lncRNA upstream 131699 20500796 ~ 20502665 (-) True G49942
XM_026932247.2 mRNA downstream 14486 20327905 ~ 20343502 (-) True gabra2a
XM_026936680.2 mRNA downstream 40819 20309844 ~ 20317169 (-) True gabrg1
XM_034302742.1 mRNA downstream 78946 20263949 ~ 20279042 (-) False gabrb1
XM_026936667.2 mRNA downstream 79714 20262035 ~ 20278274 (-) False gabrb1
XM_026940791.2 mRNA upstream 58774 20427871 ~ 20442232 (-) False trim8a
XM_026940782.2 mRNA upstream 58774 20427871 ~ 20442232 (-) False trim8a
XM_034302970.1 mRNA upstream 58774 20427871 ~ 20442232 (-) True trim8a
XM_026937086.2 mRNA upstream 76323 20445420 ~ 20461102 (-) False sufu
XM_026937100.2 mRNA upstream 76323 20445420 ~ 20461101 (-) False sufu
XR_004577815.1 other downstream 690327 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1038255 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1744587 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2696604 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2783566 17562332 ~ 17574422 (-) False LOC113538666
TU59887 other upstream 1242677 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1527087 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1580758 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1666188 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 2405258 22774355 ~ 22788783 (-) False znf318

Expression Profile