RNA id: TU59001


Basic Information

Item Value
RNA id TU59001
length 234
lncRNA type intronic
GC content 0.40
exon number 1
gene id G49853
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20523816 ~ 20524049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATAATTGAGCGTTCTTAGCATCCAAAAACACTTTCTGATAGGTGGCCTGTAAGTGCTGAATAcgttaacaaaacaaaaacgcaACAGCAAATTCTGGAAACACATCGACATGAACTCGAAACAGAATGCTAGGTGCttactgaacatcacatgctcatTGCTGAATGGACACATCCTATGACTGTCACAAAGAAGAATTGCACTTTTTCAGTCGGTTATCTTTTTTGCCTAG

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58889 lncRNA upstream 131229 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 332672 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 340623 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 524130 19972587 ~ 19999686 (+) True G49518
TU58551 lncRNA upstream 569221 19912821 ~ 19954595 (+) True G49522
TU59014 lncRNA downstream 56752 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 61555 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 95889 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 426521 20950570 ~ 20950991 (+) True G50140
TU59334 lncRNA downstream 439213 20963262 ~ 21043534 (+) True G50145
XM_026942556.2 mRNA upstream 2542 20517508 ~ 20521274 (+) False LOC113543984
XM_026942548.2 mRNA upstream 2542 20517549 ~ 20521274 (+) False LOC113543984
XM_034302980.1 mRNA upstream 2542 20517549 ~ 20521274 (+) False LOC113543984
XM_034302981.1 mRNA upstream 2542 20517549 ~ 20521274 (+) False LOC113543984
XM_034302978.1 mRNA upstream 2542 20518271 ~ 20521274 (+) True LOC113543984
XM_026938361.2 mRNA downstream 1802 20525851 ~ 20552594 (+) False dctn1b
XM_026938352.2 mRNA downstream 1803 20525852 ~ 20552594 (+) True dctn1b
XM_026938378.2 mRNA downstream 1803 20525852 ~ 20552594 (+) False dctn1b
XM_026938370.2 mRNA downstream 1804 20525853 ~ 20552594 (+) False dctn1b
XM_026937214.2 mRNA downstream 49195 20573244 ~ 20602048 (+) True adss2
XR_003403773.2 other upstream 1167718 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 50924 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 481401 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1497358 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2260279 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2590136 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile