RNA id: TU59014


Basic Information

Item Value
RNA id TU59014
length 4678
lncRNA type intronic
GC content 0.37
exon number 2
gene id G49863
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20580801 ~ 20585500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGGTGTAGTTCCTGCTAGTTTGAATAGGAAAGctgattttaaaaatccaaaagtATATGTTACATGCATGGTGGttataattaaaacataataacatTACAGGTGAGATGGTATATCAGTAGAAATAAGGCAAtgttaatacagaaaatgtatatGAAGTCAAATGTACTACTAACTCTGTGAATATATGACGTGTGTAGTGAAGAGACCTACTCCTTCTCATAGCTATTCTTTTCTTATAACATTATGTATAATAATTTAAGGCTTTTGTTAGGAGCTTACTGGAGAAAATACTATTTAGGTGAAGGGTATAGTTAAATCCTTTGTTAAATACAGTCAAATCctgctttattacattttataattcttTTGGCAAGGTAAATCAGTGTGTAGAATGTGACCTGGGCAGATTAAAATGTTGGAGCTCAAGCACCGATTGTTAGTTTGCATACCAGAAGTATCTGGCTAATGTCTTAAGTAAGTATAGaaacaatttacaatttattatattaagcTTGAACTTCAGGTGGAAAATGTATGGGTGAATTGTTTGTTCCTGATAGATTCACTGAATCAGAGCTGGTATCTCTCTGTATCGATATAAAGTTTAGTGCTTTGTGTAATTATATTCAGGCTTTTTAAGTGGTGACTCAAAAATGGCCAAACGAATAAGTACAGAGTCTAAAAACCACATTTATGAAGTATTGCAGTGCATTAGCAACATTTGCTTGTGTGAAATGTGGAACCAGTAAAAGGCTACTGCAGTCTCTAAAACCTGCAAGGAAAGATCAGTTTcagtattaatttattatttagtatttcaagaaaatatttttctaagCGGGTACATTTAGGCCTATGAAATGGACAAATCTTGTCATgtcataacattttttaatcaagttCATGTCACTTCACAAAATATTTGAGGTGTCTTCATTAAATGATGTTGACGTTGACGAGAACTTGGTGAGATCACACCAAAAGCCATCCTAATTATCAGCAGCTCGCTGGATAGACAATGTGGTTGACACTGATAATTGCTCCAGTCCCAGGAACAGTCAAACACCTGAATAGATTTAAACACTCCACTCTCATTATTATATAAGtggtgaggaaatgaggaaaacaGTGGTGGTGTAATCGATAAAACAGGGAAAGTAATGAGTTATAAATAAGCAACTAATATAAGTTATTACtaaactattttattaattGCTTAGGAAATGATTATAAACTTCTATCTTCCACTTCTTccttcgtctctctctctctctctgactcactcactcgcttTGATTTTCTCCCTAGTTTAGTCTGCTGCTcatgtaacacacttggaggaaaatGCTATGCCCATccttccacatgcatgagctcacacacagccaCTGTCATGATTCTGTAGAGGCAGCGGATGAAGCACAGATTTTATTGTAAGAAGtgcaacacaaacaacaaaaccagTGAAACAACCAgtgaaaattaaatgcaaacaaaGGCTATAAGGCAAAAACAGGCAGACTATGAGCGAGGCAGTGGCACACACGATGACACATACACACGACAAcgacaaaagcttgacaatgaaacatACAGAAACCAAGACTTAAGTAGGAGTTCTGATTAGGTATGAATGTTTAGTGAGACATGTGACAAGGTCATGTAGTCAAGCGCCGATTTCGGTATAACCACGACACCCACGATCGGTCAGTGTCACTGTGTCTGATAGAGGAGAGAGCTCACAATCTTTGGATGAcagggtgaacacttttctgttgcaccactcaggagcccacATTTTTAACTTGCTTTATAATTaagttacatatttatttatatctttgGCTCATTAGAAGCTTAATGACTTTTCGTTTTGGAGTTTGtatagaaaacaaacaaaactaaccTACTAAAATTACTACCAAACTTACTAACAAAAGCTGAATTAAAAACCAGGCTGTAAGTAGTCGAAACATCTGTGAAATACTCTACAGCTGTACGTGCAGTATTGAGCATGTATTATTTTTCCTACCAAAGCCCTGTGTGTATCTTTCCACTCTGTGTGCATTTCCCCCGGCTAGAATAAAAGGGGTTTTGTTGCACCAAGTCAACAAATGAGCATGTGAACTTTGTGGTTAATAGTACTCATCAGAAATAGCACTGATCAGGGGAGCTGCAGGAAACTGTATGCAACATCATGTTCAATAGGCTGTAGGCTTTGTTTGGCGATGAGACAGACGTTCATTTACATTGGCGTGGCGTGGGAAAACATTTCCTACTTGCACTCTTTGCCTGTCTACTACAGTTTGTTGTCTCTATATATGCTAACTTTTTCATATTAGGCTTGCTAAAtggaaataataaatcaaagaGAAAGCTACAGTTAATTCATACTTTAGTTGTAGTTTAACTGGCTGTAGTTTACAGTAAGAACTTAAAAGCTTGTCAGGCAGCCTATGTACCCAGAGGGTAGCAAGTTTATacttaagcaatatcgcatgagCAAGTGTGCAGTTGCACTGAATATTGTCATGGTTATGATTTGGCCGTAGGTATGAGCCCACAGGCTGAGTACTGTAGGTCACAgtcgtgctgatattcagtataatcaCATGACTGTGATTACGATATTACTTTTATACAACAGGTCTGTAAAGAAATGAAtatcgagtaagtgacatttcggacacaatatggccaaatgttctgtttatttttgctccgctagcagaaatagatcccaaagccACAATTACTTTATAGGATGTTAGCTAGCTCatattgatttgtacatttctgttaaaGGCTCTTCTGGTAAAACTGctgtcccttcttccttttcatcttcatctgaagaactttcatattttaaaccaAAGGTTATATTCctagaaaaatataatttgctGTGTAAACTATTCTACTCGGAAAGTTTCTATAGAGTGGTGCTTGTTCCATCAAAACATGCTGATTATCTTTGTTTACTTCTCAAATtatgcagaaataaagaaattatgCAATTACAGATACTGCAGGTCACTGCTGGCAGGATGGGGATTGCTACTGATAAActcacattttaacagtttgtaCTCATTCAGTGCTTTTTTACAATTGCTAACAAACATTACTCACTACCAAATTCACTTCACAACTTGTTCATACCTCTctctgtacaaacacacactacaattcaattagttcctgtttcatttgtatagcacttttaaaaatagacattgtcacagtGCAGCTTTGCAGAAGTCCGtctgtagatttatatttagatcctCAATGTGCAAGCCAGAGatgactgtggcaaggaaaaactccctgagacaacatgaggcagaaaccttgagagaatccagactcaaaagagaacccatcctcttctctTCGACACTGcatagtgtaattataaatcattcctcCTCTACAACTGTTTACTATAAAGTCATCCAGTACTGCGTGTGATTACAGCGGCAGTTCTTAGgtgcaaatatacagtatggtgAGATTATTTGCTGGAGAAAGGATGAGACATGGATACAAACTGTTTTTGGAAAGAGTTAACCCTTGTGATATCCATGTGAAACTGTCTGCAGCAAAGCTTAATTTATAACCACACTGCACTACAACTGtcaaaacaccacaaacacgTCTCAAAAGAAACTAAACCCCCACACTACTTCTGTTCTAACAAGAACAGTCAGTGCACAATGAccgaaaacacatttttaatggaCTGATCAGTGTTCGTGCCTAACTGCACTAAATGTTTTGTCCTAGACAAATGATCTGCATGTCTTCTTACCAGTTTCCTTCTATAGAGGTCACCTGAAAATGAAATTCGACACTATATTGTATGGGTCGGTTTGGGATTTGTGGTATGATATTCCTGCACACATGCTGCTGTTGATACCGCTTTGACCCAGAACCTTCactttgtctctttgtctcaATTTGACATCCAAACCCCTATTCACTTGGTATTGAATTTGAATATAATCAgttttaatacaaaatacaaaaacaagtcCGGCTTTAGAGATGCATAGTTTTGATGAAATAAATCTACAAAAGTGTTGTGCTCAAAGGAATGCATTTTGtgtcaaagcaataaaaattcGATGTACAATTTGGTCCATAAAGAGTTCTGTTTTGCTAATTGGATGAACTGTTTGAATAAAGTGAACTTGTTAGCAGTGATGCTTAATGGTACTGGTTTGCAGTTACTGCATGTAAGAGAGAACATGGACTGTCCTGCTTTTTATAACAACGCCTGCACCAGCAGTTTTCTTGGATCTATTTCTGACTGCCACAAACTGTGCTGCAGTGCTTGGAGTGATAGTTACACTGTTAAGCATGAGCAGATAAAGTAACAATGTCATGAAATAAGGCTGCACTTTATATGATTTGTTGATCATATATTGTTATTTCAGTATTGACGTGTGCAGAATTAATGTAGCAGAAGGCATCAATACACAAACAGCACTCTCAGTGAGTTGTCTTTAGACCATTAAATGAtatttagaaatgtgtgtgtcaaTATATTGCAGGCCACATTAAGTAGTCACCTGCGGGTTTTTAACATGTAGCAAGGAATATCTGAATCATAATCAGACTATgcaaacagcaataaaatatcTCTTTAGTTCATATGATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59001 lncRNA upstream 56752 20523816 ~ 20524049 (+) True G49853
TU58889 lncRNA upstream 188214 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 389657 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 397608 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 581115 19972587 ~ 19999686 (+) True G49518
TU59015 lncRNA downstream 104 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 34438 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 365070 20950570 ~ 20950991 (+) True G50140
TU59334 lncRNA downstream 377762 20963262 ~ 21043534 (+) True G50145
TU59354 lncRNA downstream 532562 21118062 ~ 21118862 (+) False camkmt
XM_034302971.1 mRNA upstream 28207 20522100 ~ 20552594 (+) False dctn1b
XM_026938361.2 mRNA upstream 28207 20525851 ~ 20552594 (+) False dctn1b
XM_026938352.2 mRNA upstream 28207 20525852 ~ 20552594 (+) True dctn1b
XM_026938378.2 mRNA upstream 28207 20525852 ~ 20552594 (+) False dctn1b
XM_026938370.2 mRNA upstream 28207 20525853 ~ 20552594 (+) False dctn1b
XM_026942277.2 mRNA downstream 63384 20648884 ~ 20745327 (+) True akt3a
XM_034302773.1 mRNA downstream 63384 20648884 ~ 20745327 (+) False akt3a
XM_026938555.2 mRNA downstream 216870 20802370 ~ 20855702 (+) False cep170aa
XM_026938565.2 mRNA downstream 216870 20802370 ~ 20855702 (+) False cep170aa
XM_026938591.2 mRNA downstream 216870 20802370 ~ 20855702 (+) False cep170aa
TU59013 other upstream 5322 20574973 ~ 20575479 (+) True G49862
XR_003403773.2 other upstream 1224703 19341350 ~ 19356098 (+) True sfxn5a
trnae-cuc_10 other downstream 419950 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1435907 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2198828 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2528685 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2868928 23454428 ~ 23455549 (+) True G51562

Expression Profile