RNA id: TU59015


Basic Information

Item Value
RNA id TU59015
length 3124
lncRNA type intronic
GC content 0.38
exon number 2
gene id G49864
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20585604 ~ 20589230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATGATTTGCTGTTAAAAAGTTtcttgtatttcatttttttccccccaatctCATATTTCTAATTCTTTCACCTTACAGCTGATATAGTCTACTTCCAAAACAGTATAACTATGGTATTGGATTTGGATGGACTTATTTCATACTTGTCTGCCTTCATTTGAAAAGCCTTATGCAACAGCTGCATATTGAATGCATCTAGTCAGGCAGTGCTACTTTAACAGTATTACGTTTCCTCCTTTAACTGTACAAAAATGATGAAAGGCCACCTGTTGCCCTGAGGGTGTAGCACATTCTACTTTCCATCTAACAAGATTCACAACATACCAAGgagtatatatttaacatactCCTAGTATGCTGatatacacagacagatgaACCATTTAGTTTTCTCAACAGAATTTTAATACATGGGAGTCAAGTTCCCAAAATCGCCAGCCTCAGGTTTGGTTAACTGTCTAATTTGGAGCTGCTTTCAACTGGAGACTTGACTAACTTATATAtcttttaaatgcattatatgTCTGACAATGTTTGGCTATAAATCTCCTCTCCTTTAAGTCTTACGGTGTTGTCATAAGCTTTACAGAATCCAATTCAACATGGCTGACTCTGCATTGTGCCATTTGGCGGTACCAAAATAGATTTATGTTTATGGCATTGGGCAGgtacccttatccagagcaacttgcatttatcttatttacacaactgagcagttgagggttaagggccttgctccaGGGCCCTgtagtggcagcttggcagtgctgggatttaaacttaaaccttccaatcagtagttcaacatcttaaccactgagctaccagtGGTTATGTAATGtgatataataattatataatactataaGACTTAAGCTACTTACGTTACATATCTACATGGCCATTCTGATATGATTGTCATATATTAACTACTATCACTATGATATTGTTtgacattattaaatattggcTTAAACTTACTTGTTAACAGTCTTTAAGAATCTCAGTAATAGCTCATTAATGTAATATCGCAGCATATTCCAAATGAAAGCTGTGtcatacagtgccttgcataagtattcacccctcttGAAtggaaaagttcagtggGGGTGGATACTTATGCAACACATGGTACATTGACTTAAGTGTAACCTTATGTGCTATAGGCCATTTAGAAAGGCACCCATGAAAGTTAAATCCTTTACAGGACTTTTGTAGGGTTACAAGAATTAATCACCCTGTTTAATACAGCTCTTTTATTGACATGATTGAAATAGGCACTTATAGGCGCTGGACAAATAGGCACTCATAGGTGCAAGACTAAGAAACATTGAGCTAAATACTCCTCTTAACCAGGGGCAGGTCAAAGAAATTCAGCTCAAATATGTATTTTGTTTCTAATTTGTTTCTAACTCTTAAAATCATGCCCGTTATCAACTTGTATTATCTACAACTCATTGAATGCAACTGAATATCGTTCAGTCTTAATATGCAGCAAATACCAATCCTGGCGAACATAATGAATGGACATAACTGTTCAGTTTGTATAGGAAAAGCTTATGTAGTAACTCCATGTTAAACTCAAACGCAAGCTCTTCCAAATCGTAGGTCAGGTGAAGTACCCTGGCAGTAACAATTTGCATGTCACTATACTGCAAAGGATGATCCCAGTTACCTCTGAAAAATCATCTTATATTCTACtgttattcattatatataagTTATTATTCTCGTCATATCGGTTctaaacataaaatacacagtGGGTGCAAATCAGTTTATACGGCAGCATGCTGTGCCAGTGGCTTGTGACAGGTTATTACAGGGATCTGAGTGGTGTGGCTCTGTCAGTGTGGGTGATAAGTTGGCAAGCCTGATACTTATCCCACTACAGCATAAGCTATCTCCCCTCTAGGACCCGTGCTTATCAGTCACAGCTAGCTACTTTTAGCCTGTCAGGTTTGGAATATGGAAGTCAGCCAGCACAGCCTGATGCCCCAATCCAGTGACAGTCATGTGCACCGTAAAGATACAGAACATATAAAAATGTCACAGGTAATTCCTGGAAATCTGGAAATAAGGTTGCTTATTTTAAGTGCTTCTGGAATGTAATTACTTTAGAAAAATCTTATTGAcctgtaattaaataaacaagttATTGATCAGCAGTTTGTTAAACTTGCAAGGTTTTTTATGTCCTTGTAGCAAGGTCCCTGCGACTTTGATATCATTTTCACCGGTTCCTGTTCTTGTTTATGCTTTTGATAGAACTGTTATTAGAACATCTTTATCTTTAATGCACAACAAGCTCTGAGTGTATAGAAGCAGTTCTCAAAATTGCTAGTTCTCTGTAGTTGGCGTGATTCTTAGAACCTGTTTACAGTTCTCAAACTATCAGCCACCAAAGAAACTTtacagattcttttttttttagagagtgTGGTTACAAACAGCTTGGTTAAACTTGCTTTCGAGACGTGAACAGAGCCTTAACAGTCAGACGTAATGTGAATTTCAGTCCGGTACTTTTTCTTCTCTAACACGTGGCATTCACCCCCAGGTTCACATTAGAGGACAAAAAGTTGCTCgtgtcacttgtagtttgtctctcgTGGCTGTGTAGCAACTGCTACTGTTGTGACTTGTAGACATGCACTGTCTTGCATATTTTTGTAAGTTCTGATGAGAAATGGTAGCAGCCAAAATGTATAGCCTGCAGCTAATTAGttaaatacaaatgaaacacAGTGTGAAAAGTGGTTGACTGATTTGCATGTTATGTATAAGGCTTTGTACTAGCTTCGTACAAGgtagcagattagcaaagcaagtaAACtatactagctacatacactcaccataagcaccaatgatctctgctCCTTCTttcaaagctttatttttctttgtaacatcTCTGTAGAtgtttaatgagaggttgtatatgacaggataagacgAAACCACGATTATAAGctttccttccatttttgcatGGCAGaaagtaaatgggaactaactgaAGGTAGGAATTAAAGTTGTGAGTAGGCAACTGAAGAAACATTGGACTTCACACACCACAAGATTGGCACGAGTGGGAAATGTACTGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59014 lncRNA upstream 104 20580801 ~ 20585500 (+) True G49863
TU59001 lncRNA upstream 61555 20523816 ~ 20524049 (+) True G49853
TU58889 lncRNA upstream 193017 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 394460 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 402411 20121048 ~ 20183193 (+) True G49630
TU59007 lncRNA downstream 30708 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 361340 20950570 ~ 20950991 (+) True G50140
TU59334 lncRNA downstream 374032 20963262 ~ 21043534 (+) True G50145
TU59354 lncRNA downstream 528832 21118062 ~ 21118862 (+) False camkmt
TU59475 lncRNA downstream 590376 21179606 ~ 21179811 (+) True G50284
XM_034302971.1 mRNA upstream 33010 20522100 ~ 20552594 (+) False dctn1b
XM_026942277.2 mRNA downstream 59654 20648884 ~ 20745327 (+) True akt3a
XM_034302773.1 mRNA downstream 59654 20648884 ~ 20745327 (+) False akt3a
XM_026938555.2 mRNA downstream 213140 20802370 ~ 20855702 (+) False cep170aa
XM_026938565.2 mRNA downstream 213140 20802370 ~ 20855702 (+) False cep170aa
XM_026938591.2 mRNA downstream 213140 20802370 ~ 20855702 (+) False cep170aa
TU59013 other upstream 10125 20574973 ~ 20575479 (+) True G49862
XR_004577568.1 other upstream 1229506 19341350 ~ 19356098 (+) False sfxn5a
trnae-cuc_10 other downstream 416220 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1432177 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2195098 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2524955 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2865198 23454428 ~ 23455549 (+) True G51562

Expression Profile