RNA id: TU59102


Basic Information

Item Value
RNA id TU59102
length 1259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G49941
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20499533 ~ 20500791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGGTCAAGGTCACATTAAGGTCACATGTCTGAAATAGGTTTCTCTTCAacacttccttcctgtttgaagcaTATTTTAAGTGTATTTCAAGAATGACTAGACTTGATGGAAGCAGAGGCATCCCTGTCAACGCCACTGGTgtcgagttctacttgttttgaTTTGTGTCTTGATTCCAACCCTGCTATTGATCCCTATAGTACTCAACTGTTACCTGGTTAGTGACTGATTGGTTTGTCTATTTGAGCCCTTGTGTTTCATTGTCCCAGGGCGAAGTCTCTttcatgtatatgtgtgtttctgagcCATGGTTCTCTGTGTTTTCTGGTTCTCTGGTTTGTACTTCTGGTTTGACTTCCCAGTTTTGTTCTGTGTCTGTGCCAATTATGATCATGACCTATGCTATGAACTCCTACTTCATCAACCCACAAATCACACTTATGATTCCAAGGTCTCAGTTTATGAATTTGCAGTGCAGTATGGATTTTAAACGAAAACCATGGTCTTAACAAAAGAGAGTCCTGTAAACTGTACCATATTTTGGATTGGCGATAAAGCTCAACAGCCTAAGGGTATTAAATGATTGTAGACGAACACCCTTCCAGATGCCAAGAGTGGGGAAAGATGGCCCCCAATCCCAACTAAATGAGCTCTgtgcctgaaacacacacaaaatcaatatAGTCATGTTTCACTGTTTTAGATGAACTAGTATAAGCTAACATCATACATCAAGTTTTAAAATACCTTTCGAATAAAGTTTACATGACACTCTCCTTTCTGTACATCAGGAGGACATTCTGGGGGGACTTTGTATGAAGTGTGGGCTTGACTTCGCTCTGCTGCGTAGGTCACGGCTGACATGAGCCACACTTCCAGAACATTAACTTCCTTAAGTAGTCCTGCAACCTCAAAGTCCTGAGAACGAATGTACAAATATTGTACTGTTCAGTCACTGAGTTATCACTTGTTTGATGCgtcagtattttaaaatatcatgttCTCATCTTATCAGGGTGTTAAAATTAACACAATTGTTTGGAGAGAATTTTTTACATACGTATCTCCGGAACATGTTGTCTGTCTTTCCGATGACGACTCCATTTAGAGATATAGTGGAGATTGTGTCCACACCTTCAAATATGAGAACAGCTCTCCTACTCTCTCTGTTGAAGCACGGTATTAGACAAAATCTTAATCTTGTTTATATGGTCAACAGCAAGCAATTACTGAGATATTGTTTAGTTAATACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58984 lncRNA downstream 20845 20477708 ~ 20478688 (-) True G49841
TU58979 lncRNA downstream 26238 20472477 ~ 20473295 (-) True G49836
TU58937 lncRNA downstream 34583 20463893 ~ 20464950 (-) True G49806
TU58921 lncRNA downstream 139082 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA downstream 148057 20349410 ~ 20351476 (-) True LOC113537651
TU59106 lncRNA upstream 5 20500796 ~ 20502665 (-) True G49942
TU59107 lncRNA upstream 3446 20504237 ~ 20504970 (-) True G49943
TU59108 lncRNA upstream 5010 20505801 ~ 20506409 (-) True G49944
TU59126 lncRNA upstream 20903 20521694 ~ 20522064 (-) True G49957
TU59128 lncRNA upstream 22273 20523064 ~ 20523298 (-) True G49959
XM_026937086.2 mRNA downstream 38431 20445420 ~ 20461102 (-) False sufu
XM_026937100.2 mRNA downstream 38432 20445420 ~ 20461101 (-) False sufu
XM_026937093.2 mRNA downstream 38432 20445420 ~ 20461101 (-) False sufu
XM_026937079.2 mRNA downstream 38432 20445420 ~ 20461101 (-) True sufu
XM_026937107.2 mRNA downstream 38720 20445420 ~ 20460813 (-) False sufu
XM_034302973.1 mRNA upstream 53702 20554493 ~ 20573783 (-) False desi2
XM_034302972.1 mRNA upstream 53702 20554493 ~ 20565432 (-) False desi2
XM_026937225.2 mRNA upstream 53702 20554493 ~ 20565432 (-) True desi2
XM_034302990.1 mRNA upstream 119141 20619932 ~ 20629167 (-) False zbtb18
XM_026943039.2 mRNA upstream 119141 20619932 ~ 20627284 (-) False zbtb18
TU58946 other downstream 130104 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 130436 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 130436 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 831872 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1179800 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 1110983 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1395393 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1449064 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1534494 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 2273564 22774355 ~ 22788783 (-) False znf318

Expression Profile