RNA id: TU59334


Basic Information

Item Value
RNA id TU59334
length 1113
lncRNA type read_through
GC content 0.46
exon number 2
gene id G50145
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20963262 ~ 21043534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCCGTCAGCGATGGGTAGGACGTCATCGGCTTAGAACATGTAGCCTAGTTAGCTAAACCGCCGCTTTAGCTTCCGAATTTTGTAACATTTCACTTTTCTCATGACCGACATTGCATACAATTGTCGGTTGGTGTCAAATATGTATGAAAAACCTTATCACGCGAGCCGCACTTTGTTCAGGGAGCAGTTAAAAGTTACCGTGTGAAAATAGCCGCATaagctagcctgctagctagtctagctaaCCAACAGCTAGCCCTGCTGCGCTAGCGGTTAGCGACTGGATCCACCGTAAGCAGCACAGTAATTAGATGTTCAGAGAGCGGCTTTACGGGGAGAAATTCGAGTCGAAGTCTGCTTGGTACGTGGCGCCTTGTAAAGGGATAATTACATCCTGAGATAAGGTAAGTCACTTTCTATTATTCTGGCAACCCGAAAAGTTTAGCTAGCTTTAGCTAGTGGGTTAGCTAGCTGCGTTTTGTAACACCTGACGCTGCCTGAGACGAACTACCTGCCTAACTAGCCAGATAACTCTTCGTTTAGCTAGTTATCGGTACCTAATCCACTGAAAGTCGTTATTTTAGTTAGTTTTAAATAGTGACAGGAATGGGTAAACTCGTACTGAGCTCTGTAGTCCAGGCCAGCCTTTTAAACTGGACATATTAGCTTGTTTATCATGGAGACGACGCTAGCACACTGCGAGCTTAGTCCTGTAGTGCACTAAGCGACTATTCGCTCTTTCAGGCTAACGATAGATACATGCTGCGGTTCAATCAgcaagtgacacacacacacaggaattgACAGTAGACTATACGCTTTAGAAATGCAACATGTGCGTTgattacatacacacaacactcacagatGGACACAGAGTAATTGATTCTGGAATTGCCACAAGGTCAATCCTCGCCGCGATCAAACACGCAGACACTTTCAGTCAGTTATGCCCTggctcacacacgcacaccacaGTCCCACATTTTTGGCATTGCCACCATAAACAGAAGCAGTTTTCCTTTTTAGCGCTCTGGTGTGAATGTGCAGGgttgcagtctgtgtgtgttcagtctgaCACAACAGGTGAAtcagcagtgtttgtgtgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59323 lncRNA upstream 12271 20950570 ~ 20950991 (+) True G50140
TU59007 lncRNA upstream 246965 20619938 ~ 20716297 (+) True G49857
TU59015 lncRNA upstream 374032 20585604 ~ 20589230 (+) True G49864
TU59014 lncRNA upstream 377762 20580801 ~ 20585500 (+) True G49863
TU59001 lncRNA upstream 439213 20523816 ~ 20524049 (+) True G49853
TU59354 lncRNA downstream 74528 21118062 ~ 21118862 (+) False camkmt
TU59475 lncRNA downstream 136072 21179606 ~ 21179811 (+) True G50284
TU59491 lncRNA downstream 154743 21198277 ~ 21198508 (+) True G50297
TU59504 lncRNA downstream 162860 21206394 ~ 21210115 (+) True G50310
TU59506 lncRNA downstream 167303 21210837 ~ 21213946 (+) True G50311
XM_026942324.2 mRNA upstream 77550 20877886 ~ 20885712 (+) True abcg8
XM_026938582.2 mRNA upstream 107560 20802372 ~ 20855702 (+) False cep170aa
XM_026936915.2 mRNA downstream 44407 21087941 ~ 21118964 (+) False camkmt
XM_026943202.2 mRNA downstream 137401 21180935 ~ 21183818 (+) True six3a
XM_026939385.2 mRNA downstream 437165 21480699 ~ 21501499 (+) True socs5b
XM_026939376.2 mRNA downstream 437168 21480702 ~ 21501499 (+) False socs5b
XM_026934272.2 mRNA downstream 474252 21517786 ~ 21522535 (+) True prop1
TU59013 other upstream 387783 20574973 ~ 20575479 (+) True G49862
XR_004577568.1 other upstream 1607164 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 977873 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1740794 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2070651 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2410894 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 2653498 23697032 ~ 23697294 (+) True G51749

Expression Profile