RNA id: TU59475


Basic Information

Item Value
RNA id TU59475
length 206
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G50284
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21179606 ~ 21179811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCAATATGCAGTCAGCATTTCAATACAGGTTATTTCCAGTCCAAGAAGCTTTCCAAAGCGACCAATTCAAGTGGTACTTGGAGTTGCTTCACTGAAGTTTCAGATGACAGGGAAGCAAACGAGTGTGATattggagaaaaataaaactcacaACACCACCACTTCCATTTCTCCCTTCCTTCCCCAAATCTGAGGTAATCTATG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59354 lncRNA upstream 60744 21118062 ~ 21118862 (+) False camkmt
TU59334 lncRNA upstream 136072 20963262 ~ 21043534 (+) True G50145
TU59323 lncRNA upstream 228615 20950570 ~ 20950991 (+) True G50140
TU59007 lncRNA upstream 463309 20619938 ~ 20716297 (+) True G49857
TU59015 lncRNA upstream 590376 20585604 ~ 20589230 (+) True G49864
TU59491 lncRNA downstream 18466 21198277 ~ 21198508 (+) True G50297
TU59504 lncRNA downstream 26583 21206394 ~ 21210115 (+) True G50310
TU59506 lncRNA downstream 31026 21210837 ~ 21213946 (+) True G50311
TU59584 lncRNA downstream 133393 21313204 ~ 21350033 (+) False G50384
TU59582 lncRNA downstream 166354 21346165 ~ 21350033 (+) True G50384
XM_026936906.2 mRNA upstream 60642 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA upstream 60642 21087941 ~ 21118964 (+) False camkmt
XM_026939903.2 mRNA upstream 169016 21002369 ~ 21010590 (+) True slc3a1
XM_034301821.1 mRNA upstream 183228 20986889 ~ 20996378 (+) True ppm1ba
XM_026942324.2 mRNA upstream 293894 20877886 ~ 20885712 (+) True abcg8
XM_026943202.2 mRNA downstream 1124 21180935 ~ 21183818 (+) True six3a
XM_026939385.2 mRNA downstream 300888 21480699 ~ 21501499 (+) True socs5b
XM_026939376.2 mRNA downstream 300891 21480702 ~ 21501499 (+) False socs5b
XM_026934272.2 mRNA downstream 337975 21517786 ~ 21522535 (+) True prop1
XM_026934281.2 mRNA downstream 337975 21517786 ~ 21522535 (+) False prop1
trnae-cuc_10 other upstream 174087 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 604127 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 1823508 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 841596 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1604517 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1934374 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2274617 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 2517221 23697032 ~ 23697294 (+) True G51749

Expression Profile