RNA id: TU59858


Basic Information

Item Value
RNA id TU59858
length 491
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G50624
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21515152 ~ 21515642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCATCCTCTTGCTACAGGTTTCAGtggataataaaaaaagaatacttTTACATTCACATCCTTGGTATTCATGATGCAAACAGCGTCACCAACCCACAGCTATGGGTAATGTCCCACTAATATCCTTTCTACTAGTACTAATATGAGccttataaagtataaaatgatGTATAAGTGAGGAGAGAATCTGTATGTATAAATTAATGAGGATGTGCAGTTGTGtgaagcatgtgtgtatgtgggctGTTACAGTACATGCATGTGTAAATGCATGTGTAAATGCATAACACAGGCGGCGCAGGGGCCCTGCAGGAAAGAAGACACCACCACCGTCTGGACCGCACAAGCATCCAGACAACAGCTCTGCAAATCCACCCTGCCAAGCTCACCTGCCAAcaatacacacacgcgcacatgcatgcgcgcacacacacacacacacacacacacacacacacacaaagtttgtCTTACTATCATTGTGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59853 lncRNA downstream 2330 21512605 ~ 21512822 (-) True G50619
TU59831 lncRNA downstream 93023 21387743 ~ 21422129 (-) True prkceb
TU59640 lncRNA downstream 129655 21346142 ~ 21385497 (-) False G50433
TU59644 lncRNA downstream 129655 21346142 ~ 21385497 (-) True G50433
TU59513 lncRNA downstream 298266 21216658 ~ 21216886 (-) True G50318
TU59860 lncRNA upstream 2173 21517815 ~ 21518078 (-) True G50626
TU59884 lncRNA upstream 90786 21606428 ~ 21610897 (-) True G50647
TU59895 lncRNA upstream 144016 21659658 ~ 21737394 (-) True G50656
XR_004577805.1 lncRNA upstream 252172 21767814 ~ 21786645 (-) True LOC117596829
TU60045 lncRNA upstream 366244 21881886 ~ 21882106 (-) True G50802
XM_026942151.2 mRNA downstream 36447 21392447 ~ 21478705 (-) False prkceb
XM_026942143.2 mRNA downstream 36447 21392447 ~ 21478705 (-) False prkceb
XM_026939881.2 mRNA downstream 131036 21349757 ~ 21384116 (-) False epas1b
XM_034302943.1 mRNA upstream 6566 21522208 ~ 21526777 (-) False mcfd2
XM_034302941.1 mRNA upstream 6566 21522208 ~ 21526755 (-) False mcfd2
XM_026934302.2 mRNA upstream 6566 21522208 ~ 21526722 (-) True mcfd2
XM_026934294.2 mRNA upstream 6566 21522208 ~ 21526712 (-) False mcfd2
XM_034302942.1 mRNA upstream 6566 21522208 ~ 21526684 (-) False mcfd2
TU58946 other downstream 1145723 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 1146055 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 1146055 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1847491 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 2195419 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 96132 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 380542 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 434213 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 519643 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1258713 22774355 ~ 22788783 (-) False znf318

Expression Profile