RNA id: TU60015


Basic Information

Item Value
RNA id TU60015
length 205
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G50772
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21868824 ~ 21869028 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGGGTAAGCCTGGGAGAGTGAGCGAGAAATAGGAGAAAGCATTTCCTTCAAGTCGACAGGCTGCCAAGCTTCTTTCATTCTCTTGGCCCTCATCCCTCGTTCCTCCCCTCTCCTCCTCCACATCCCAGAGTGGGAGTGAGGGACACAGACCCCATATGGAAGCCATTAACCCAGGCATCTGAGACTCATCATGCCGGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59732 lncRNA upstream 294771 21567415 ~ 21574053 (+) True G50516
XR_004577869.1 lncRNA upstream 342757 21525437 ~ 21526067 (+) True LOC117596875
TU59746 lncRNA upstream 351069 21516282 ~ 21517755 (+) True G50528
TU59584 lncRNA upstream 518791 21313204 ~ 21350033 (+) False G50384
TU59582 lncRNA upstream 518791 21346165 ~ 21350033 (+) True G50384
TU60026 lncRNA downstream 5785 21874813 ~ 21875015 (+) True G50783
XR_003404631.2 lncRNA downstream 135690 22004718 ~ 22015489 (+) True LOC113545609
TU60120 lncRNA downstream 151302 22020330 ~ 22023811 (+) False wu:fj16a03
TU60131 lncRNA downstream 166454 22035482 ~ 22041152 (+) True G50880
TU60136 lncRNA downstream 166454 22035482 ~ 22041152 (+) False G50880
XM_026940045.2 mRNA upstream 132291 21733757 ~ 21736533 (+) True LOC113542474
XM_034302820.1 mRNA upstream 136960 21645736 ~ 21731864 (+) False thada
XM_034302821.1 mRNA upstream 136960 21645750 ~ 21731864 (+) False thada
XM_034302818.1 mRNA upstream 136960 21645874 ~ 21731864 (+) True thada
XM_034302819.1 mRNA upstream 136960 21645874 ~ 21731864 (+) False thada
XM_026945610.2 mRNA downstream 30528 21899556 ~ 21905109 (+) True haao
XM_026933215.2 mRNA downstream 45521 21914549 ~ 21917668 (+) True hcar1-3
XM_026932766.2 mRNA downstream 85877 21954905 ~ 21960399 (+) True LOC113537982
XM_026932775.2 mRNA downstream 85877 21954905 ~ 21960399 (+) False LOC113537982
XM_026932110.2 mRNA downstream 98713 21967741 ~ 21970960 (+) True LOC113537563
trnae-cuc_10 other upstream 863305 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1293345 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2512726 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 152379 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 915300 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1245157 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1585400 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1828004 23697032 ~ 23697294 (+) True G51749

Expression Profile