Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU60082 |
| length | 335 |
| RNA type | TUCP |
| GC content | 0.55 |
| exon number | 1 |
| gene id | G50837 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 21949855 ~ 21950189 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404488.2 | lncRNA | downstream | 50816 | 21893534 ~ 21899039 (-) | False | LOC113544235 |
| XR_004577807.1 | lncRNA | downstream | 53040 | 21893534 ~ 21896815 (-) | False | LOC113544235 |
| XR_004577808.1 | lncRNA | downstream | 53040 | 21893534 ~ 21896815 (-) | True | LOC113544235 |
| TU60045 | lncRNA | downstream | 67749 | 21881886 ~ 21882106 (-) | True | G50802 |
| XR_004577805.1 | lncRNA | downstream | 163210 | 21767814 ~ 21786645 (-) | True | LOC117596829 |
| XR_003404516.2 | lncRNA | upstream | 50858 | 22001047 ~ 22003733 (-) | True | LOC113544581 |
| TU60104 | lncRNA | upstream | 51358 | 22001547 ~ 22003772 (-) | False | LOC113544581 |
| TU60333 | lncRNA | upstream | 84754 | 22034943 ~ 22035162 (-) | True | G51050 |
| TU60351 | lncRNA | upstream | 107964 | 22058153 ~ 22059321 (-) | True | G51053 |
| TU60359 | lncRNA | upstream | 156903 | 22107092 ~ 22192916 (-) | True | G51058 |
| XM_026944078.2 | mRNA | downstream | 39062 | 21908981 ~ 21910793 (-) | True | LOC113544981 |
| XM_034303051.1 | mRNA | downstream | 304343 | 21611663 ~ 21645512 (-) | True | plekhh2 |
| XM_034303052.1 | mRNA | downstream | 304357 | 21611663 ~ 21645498 (-) | False | plekhh2 |
| XM_026935721.2 | mRNA | downstream | 347596 | 21577863 ~ 21602259 (-) | False | si:ch73-105b23.6 |
| XM_026935712.2 | mRNA | downstream | 347596 | 21577863 ~ 21602259 (-) | True | si:ch73-105b23.6 |
| XM_034301397.1 | mRNA | upstream | 85643 | 22035832 ~ 22123649 (-) | True | LOC113540944 |
| XM_034301391.1 | mRNA | upstream | 85643 | 22035832 ~ 22085504 (-) | False | LOC113540944 |
| XM_034301408.1 | mRNA | upstream | 85643 | 22035832 ~ 22085503 (-) | False | LOC113540944 |
| XM_034301384.1 | mRNA | upstream | 85643 | 22035832 ~ 22085503 (-) | False | LOC113540944 |
| XM_026934474.2 | mRNA | upstream | 229958 | 22180147 ~ 22204975 (-) | True | pkdcca |
| trnai-uau | other | downstream | 53578 | 21896184 ~ 21896277 (-) | True | trnai-uau |
| TU59887 | other | downstream | 335588 | 21611774 ~ 21614267 (-) | False | plekhh2 |
| TU58946 | other | downstream | 1580426 | 20357988 ~ 20369429 (-) | False | gng2 |
| TU58944 | other | downstream | 1580758 | 20357934 ~ 20369097 (-) | False | gng2 |
| TU58943 | other | downstream | 1580758 | 20357988 ~ 20369097 (-) | False | gng2 |
| TU60345 | other | upstream | 85096 | 22035285 ~ 22101383 (-) | False | LOC113540944 |
| XR_003404067.2 | other | upstream | 824166 | 22774355 ~ 22788783 (-) | False | znf318 |
| XR_003404066.2 | other | upstream | 824166 | 22774355 ~ 22788783 (-) | False | znf318 |
| TU60979 | other | upstream | 1497719 | 23447908 ~ 23454217 (-) | True | G51576 |
| XR_004577819.1 | other | upstream | 2067075 | 24017264 ~ 24040100 (-) | False | mlh1 |
