RNA id: TU60131


Basic Information

Item Value
RNA id TU60131
length 5276
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G50880
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22035482 ~ 22041152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttTAGTATTTTTCTGCCCAATGACAGGAATGCATGAAAGACATATTGGCTCAAACACTGTTACAAGAAAAAAGGTTCATATTTGTTGACATAATTTTCATTATCATTGCTGCAACCAACTTCATCATTTGTCACAAAGCTTTTATATGAAAACCGGCTCCTTTCCCACCCACTTATCCAATGCAGATCTGATCATGCAAACTGGCAATTGGGAAAGCATTCTTGGAATCTGATTCCAGGGTTCCTAGTGTGGAAAGGGCCACTAGCTAGAGATCCAGACCATTCCAGAAGAGTTTTAATTTTCCACTCCAGTTTTGCATTGTCTCActctttccttcttcctctccctcatttttttttatacaaggCCATTTCATGCAGGAACGGAGACTGTAAATGTCTGTagaaacacttcagaaacacagaccattgaaaaaaaaaagattagtcTGATTACTGAATGTCAGACATGGATCCGGCCTGCCCAATAAACGTCTATGCATTTATCCACAGTGCCATTTCAATTATATAAAAAGCACTTCTGGATATCACACCAGCTGTTATCAAACAAAACACCTcttcaaaaaccaaaaaaatacaatatatttacCAATATCATATTCCACACTCACCCAAAGAAGACACATAGCAAGGCCACTCGTGACATTCAAGAAACATTCCTAATGAAGCCCCTTATTTACACACCAATGTCAGGTAACAGTGTTCTGAATGTCACCTTCACTGGATGCAAAAAATGTTAAGTCAGTTTCACAAGTAAGGGTCCTAGAGGCAAAATGTATCCAAAGAATTTCCAAGTAAATCAGAATGTCCAAGAAGAACATCCCCTTTACATACAAGCTGCTATCTAACTGGAGATTTAAGATCTTGTCCTGATTTCTTATCCGCTAGGTTTTCAGTGTGGTTCTGCAGCATCAGTGATTGCAGAACTGTCCAAAAGGCTTTCCTTGATGAACATGGCCAAGTTATTGTACAGGATGCATTCCCACAgagttatatatatacatacagaggaACTATTATATACACATAGTATCCACATGTGAATGTACAAATGGTATCTGGAAATGGCAGCCTGTGAAATCCCTGAACTTAGCCTGAAGCTCGCCCGGTCACAAAGACCAAGGGCatgttgtgtgtggaaatctgCTGTAATTTTAAGAAGGTGATCAACACAGAGGCAGAAGTAGGAGAGGAAGGTGACCAGGTCTGACCCTGAGCAAAGGAACTGTGCCATTTTGCACTAAAGCTAAGTATTACAGCAAAAGCAAATTCAAATCTGTCTACAGAAATCAAAAAGAGGCATTCTCTGAAAACACCAAaactatcattttttaaaaaaatggtagcACTCCCAAAAAGCCTTATAAACCAGAGGGTTAGAAAAACTGCAGACCAGCTGGAGATGAGAGGCTGTAGTAACAGCGCTGCTGCAGCGATACACCACACTGCACAACTTGGTAGGCATATATCATCATTACATTCCATCTATTAAACACTTCTAATGCCAAAATGGCTTTCTTGAACATGCAGGCACCTACAACTAGACCAGTATCAAATACACTCAGAACTTTATATACTGAATGCttccatgtaaaaaaaaaaaaaaaaataaaaacacagcataAGTTCATCATTCACATACCAAAATCTTTATAAAACCCCCATGACTCTGCACATGTATTTGATCCATGCTTCTTAATACTCCCTAATGCCTTCACAATTCTTACAGTTTAACGAGAAATCATGCATTACCACCAGACCTCATGCCTTTATACATACTCATCCATACATTTCAATACTAAAACTTTCATCCATCCCTTTCAATACCTTGCAATGCTGCAAGTGTACAGAAGATGTCGCCAGCAACATGTCTGAGACCAggctgcttttttatttattttttgaaaattctagaccctgtattgtattgtgaaaAGGTTTAGGCCTGCATTTCAATCCGTTTTTCAACAATCACTTATCATCTTCCTTTCACATTAGTGCATCATACATAATGCAGGGTATACCAGTGAGCAGGAGTCAGTAGGAGGTTACAACAGTAAGCAGGAGATTATAACAGGGAGCAGCCGTGAGTACAAGGCTATTACAGTGAGCAGAATGTTATAATATAGAGCTGAAGTGGGCAAGAAGTTCTAACAAGAAGCAGGAATGAGTAGGATGTTATAACTGAACAAGATGTTATAACAGGGAGCAGAAGTGGGCAGAAGGATATAATAATGAGCATGAGGTTTATAAGAGTGACCAGGAGTGAGTACGTGGGTATAACAGTAAGCAGGAGGTTATAAGAGTGAGCAGGAGTGAGTAAGCGGTTATAACAGTGAAGAGGACTGAATCAGAGGTTATAACAGTGAGCAGGAGATTATAACAGAGCAGAAGTGGGCAGAAGGTTATAATAAGGAGCAGGAGAAAGTAGGAGGCTACAACAGTGAGCAGGAGGCCATAAGAGTGAGCAGGAGGTTATATGAGTGAGCAGTAGTGAGCAGGGGGTTGTAAGAGTGTGCAGGAGGTTATAAGTGTGAGCAGGAGTGAGCAGGAGGTTATAAGAGTGAGCAGGAGTGAGCAGTGGGTTGTAAGAGTGTGCAGGAGGTTATAAGAGTGTACAGGAGTGAGCAGGGGGTTATAAGAGTGAACAGGGGGTTATAAGAGTGAGCAGGAGTGAGCAGGGGGTTGTAAGAGTGTGCAGGAGGTTATAAGAGTGAGCAGGAGTGAGCAGGAGGTTATGCGAGTGAGCAGGAGTGAGAAGGGGTTATAAGAGTGTGCAGAAGGCTATGAGAGTGAGCAGGAGGGAGCAGGAGGGAGCAGGAGGCTATGAGAGTGAGAAGGAGTGAGCAGAAGTGAGAAGGGGTTATAAGAGTGTGCAGGAGGTTATGAGAGTGAGAAGGAGTGAGCAGGAGTGAGAAGGGGTTATAAGAGTGTGCAGGAGGTTATGAGAGTGAGAAGGAGTGAGCAGGAGTGAGAAGGGGTTATAAGAGTGTGCAGGAGGTTATGAGAGTGAGAAGGAGTGAGCAGAAGTGGGCAgaagtttataataataagcagGAGGTTATAAGAGTAAGCCGGACTGAgcagtgattttttattttcatttttttttttgaaaacaggCTGGACAGCAAACACGATATAGCTGAAGCACCTTAGCATTTTGTACggtctaaataaataacaaagggAAGGTGATGAGTGCATGCTGAAAACAGGTCTAGAGTTAAGATCACAGGCTGATCTTCAGAAAGTTGGAGGCATCTTGTTAGGATTTGGTGCATCACTCTTTAGAATTTGTAAATAGCACATCTCTGTATAACTGGGAACAAAAAACAGTGAGAGTGAAGAGCCACAGTGTTACTGCAGACTGGCAGAGGCTCTTCTGTGTTGCAgttcatgtttaaaatacataaaacattgtTTAATATTATATCCTTTAGCCCAGTATCTTTGTCACAATGCATTACTGAAGTGGTGAAAAACActctgagaaagagaaaggagaacAAGGACAGAGCTCTCTCCCACACTCTGACTAGGAAGGTGACCTAAATGAGTGATCCTGAGTTCCTGTGGGAGGGAGGAAAGGAAGGTGCACAAACACCTTCTTGTGGAAtgaaagatgcaaaaaaaaaaaaaaaaacaaaaccgtCAGCTCATTCATCTGCACGTGatctcatatacacacaatcacacacatttaagaCTCATTTAATCTACtctcaagataaaaaaaatcagtccaatgaacagaatgaaaaaaaaaaacagtctgaaaATGAATCTAAAGCAACTTGAATGGAAAGAGAACAGCATTTAGAATACAGGCTAAAACTGCGCCGTTTGAATATGAGAAGTTTAGATTAAGTCTGTTGGAGGAAAAACTGATGTTTGCATGATGATCCATGCTGAAGACATTCAGACAGCCTGCTGATCTGATCTGCATATGCTGTGCTGGGCAGAGCTTCAGAGACACAGGAGAAAATGTCCAGaagaaaatggctttgaacAAACTGCAGCCTCAGAAaaactgtgtgagtgtgtatgtgtgtgtatgtgtgtgtctgtgtgtgataaTATGCTGATAATATACCTAGTCGATcatgaacatttattattattagcttcaTGCCATGCTTAAAATTTGTCCACAATGATGCTAACTTGCGCAGAAGAAGCCAATGAGCTCAGTGAGTCCATTCAATGCGTCAGTGTTACCTGCCTGgcattttcaaaatattcttGGCTCAGGTAAAGATGCTATGCAGGCATttcacaaaaaaggttttgaaaCTCCTCATTATTCACAAAACAAAGTAAATGATTAGTTTAAAAAGTCTTAACATAAGCCTATATttcatttcactaatttcagttatatttttgcatttatactGGCTGATATTTTATTCTATGTTAAGTTCCATCCAATGATCTACTACATCCTTGtcattaatatgtttttttggtATGTGCCcccatgtgtttgtgtatgtgtgttggagTAAACCTCATGTTtgctgtagtgtttgtgtgtatcagtgtatccAGGCATGCTAGTGTCCGTTTCCATATTTCCAACAGCTTTTATCTATGTACTCGAAGCATGATTCCTCCTGGGCAACACAACAGCGatacttcattcattttttgcctctcttctccctctcgGACTAACGACATACAAACACACGTTGAAAGAAACATAGAAAGAACCTGAAAAGATTAAAATTTTAAGGAGCCCCTGTGCATGCCCTATCAACCTATACGGCAAGCCTAGTGCCTGTGGGTGGAGCACTCAGATGGAGACGAGGGCTAATCACCTCGGCCACCGGTTTTAAGAGGGTGGAGTGAAGGGTGTGCCCTCATCGCTGGGCGTGGCCGTGTCATCACTTGGCTCCAGACTGTCCTTTGGGCTCACGGTGCTATCAGAAGTGGGTGTGGGTTCATCCGGGGGAGGCGGAGTTTCATGGTCTTCTTGCTGTCCATTAGGAGTGGCGTCCAGCGGCTCAGTGGGTGTAGGGGGTGGCGTATTGGCATCCGGTTCCATTCTGGTGATAGGCAGAGAGGTGGGGACAGTAGCCACGGGGGCCTGGACTCGTGTGCTTGAGTTGTGTGGGGGATCACTCATGCCCAGGCAGCGCCACTGCATGATGCTGGTGTCCTTGCCGCCTGTCGACACCAGGTGTCTGTCGTTGTGCATGAAGCTAACGTTGGTCACGTGACTGCTGTGGGCACTGTACTTATGACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60120 lncRNA upstream 11671 22020330 ~ 22023811 (+) False wu:fj16a03
XR_003404631.2 lncRNA upstream 19993 22004718 ~ 22015489 (+) True LOC113545609
TU60026 lncRNA upstream 160467 21874813 ~ 21875015 (+) True G50783
TU60015 lncRNA upstream 166454 21868824 ~ 21869028 (+) True G50772
TU59732 lncRNA upstream 461429 21567415 ~ 21574053 (+) True G50516
XR_003404546.2 lncRNA downstream 186293 22227445 ~ 22229448 (+) True LOC113544795
TU60214 lncRNA downstream 210683 22251835 ~ 22252048 (+) True G50936
TU60200 lncRNA downstream 225545 22266697 ~ 22337044 (+) False G50929
TU60202 lncRNA downstream 225545 22266697 ~ 22268508 (+) True G50929
TU60203 lncRNA downstream 225545 22266697 ~ 22268508 (+) False G50929
XM_034302562.1 mRNA upstream 11922 22020322 ~ 22023560 (+) False wu:fj16a03
XM_026932110.2 mRNA upstream 64522 21967741 ~ 21970960 (+) True LOC113537563
XM_026932766.2 mRNA upstream 75083 21954905 ~ 21960399 (+) True LOC113537982
XM_026932775.2 mRNA upstream 75083 21954905 ~ 21960399 (+) False LOC113537982
XM_026933215.2 mRNA upstream 117814 21914549 ~ 21917668 (+) True hcar1-3
XM_026943156.2 mRNA downstream 202957 22244109 ~ 22265419 (+) True prph2b
XM_034302654.1 mRNA downstream 444158 22485310 ~ 22552752 (+) False LOC113538739
XM_026934084.2 mRNA downstream 444159 22485311 ~ 22546038 (+) False LOC113538739
XM_026934075.2 mRNA downstream 444160 22485312 ~ 22552752 (+) False LOC113538739
XM_026934094.2 mRNA downstream 444161 22485313 ~ 22546449 (+) False LOC113538739
TU60121 other upstream 11671 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1029963 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1460003 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2679384 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 743176 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1073033 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1413276 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1655880 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1752528 23793680 ~ 23805495 (+) False slc29a3

Expression Profile