RNA id: XM_034301384.1


Basic Information

Item Value
RNA id XM_034301384.1
length 8223
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC113540944
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22035285 ~ 22123649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actcactcactcactctgtagGCTTTGTGCGTGCGGGCAGACGTGTGCAGAGCTGTGtgagggagagcgagagagagcaagagagagtgagagaggaagaaagagtgagagcaGCCAGGATTTCTACACTGTCTGTAGAAAAGGAGAGCATTGCAAAGAGGAAACAGGACTTGCACAAgctagaaagagagagggaaccTTACACCCCGTGCAGCCACGAGGAGATTGCACacacgtacatacatacatacatagacacacacgcgcacacacacacacacgcactcggGACGTGTTTGTCTAAGGAGAATGGAGGACGGTTCAGCAAATGTGGCTCCTGCCTGCAATTCTACAGTCGTGCTGAACAACCACTGCACGGatgacAGTATCTCGGCGGCGAGTGTGTCGGACATGCAGGACCGGCTGTCGTCTCTGGAACTGCGTGTGCAGCAGCAGGAGGATGAGCTCACCGTGATGAAGGCTGCACTGGCCGACGTGCTCCGACGCCTCGCACAGTCCGAGGACATGGCTGCCAAGAAGCAGCAGAACACCAAAGGTCAGACGCCGCTACGCGAGGCTTTCTCCATGTCCTGTATCGCTAACGGTGGCTCCAGCGGCCGCAAGACTCACAGAGACAGCTCCACGGTGTCCGTAGCCCGGAAAGAGACGTTGTCCTCTGCAGCCAAAAGCGGTGCggagaagaaaaaagacaagcCTCTGCTAGAGGAGATCAAGGAGAAGGAAGAGCCACCACAAGCTAACGATAAACCCCCTTCAACACCCAGCACGCCACAGGCACCGTCCCCTTCCAGCCAACCCCCTTCCCCTCATCCCCTCCAGCCCCTCCACCCCCAGAGGGCCACCCCTGAGAGCAAGGGGTCCTCCCAAGCCAAAAGGGGCCACAGTGCAAAGCGTGGTGGAGGTATGGAGCGCTCTCAGAGCACCACATGGGAGAGCGGGGAGGAGAACAGGAACAAGCTGGTCAAAGCTGCCTCCACTTCCAAACTGCTGGCCAAAGTTGTGAAGAATGCAGAGAAACACAGAGATCCAGTTATCAGCCAAGCTAAAATGTCAACCCGTGAGAAAAACAGTCAAGAGGGCGACTATATCAAAATGTTCATGCGAGGACGACCAATCACCATGTTCATCCCATCTGACATAGAGAACTACGATGACGTGCGAACTGAACTTCCCTCAGAGAGACTCAAACTGGAGTGGGTATATGGCTATAGGGGCCGAGACTGCAGGgcaaatgtttatttgttgcCCACAGGAGAGATCGTCTACTTTATCGCCTCAGTGGTTGTACTTTTCAACTATGAAGAGCGGACACAGCGTCACTACTTAGGACACACTGACTGTGTGAAATGTCTTGCTGTTCACCCGGATAAGATCCGCATTGCCACAGGACAGATCGCAGGAGTGGACAAGGACGGCAGGCCGCTGCAGCCCCACGTGAGAGTTTGGGACTCTGTCACTCTGCAAACCCTGCAGATCGTTGGGTTGGGCACCTTTGAAAGAGGAGTGGGATCCCTTGCTTTTTCTAAAGCAgactcagGCATCCACCTCAGTGTGGTCGACGACTCCAATGAGCACATGCTGACGGTGTGGGACTGGCAGAAGAAGTCCAAAATTGCTGAGATTAAGactACCAATGAGGTGGTATTAGCGGTTGAGTTCCACCCAACAGACGCAAACACCATCGTCACCTGTGGCAAGTCGCACATCTTTTTCTGGACGTGGAACGGCAACTCTCTGGCTCGCAAGCAGGGCATCTTTGGGaaatatgAAAAGCCGAAGTTTGTGCAGTGTCTGGCCTTCCTCAATAACGGAGACATTCTGACCGGAGACTCAGGAGGTGTCCTGCTTATCTGGACCCGCAGCACAGTGGATCCGCCACCAGGAAAAGGACTTAAAGcaTTTCAGATCAGCCGTCAGATCAAGGCCCACGATGgcagtgtgtttacactgtgtCAGCTGAGGAACGGCACTCTACTGACCGGAGGAGGTAAAGACCACAAGATCATCCTGTGGGACCACGACCTCAACCCAGAGAGGGACATTGAGGTTCCAGATCAATATGGAACCATTCGAGCCGTTGCAGAGGGGAAGGGCGAGCAGTTCCTCGTGGGCACGTCACGCAACTTCATTCTAAGGGGCACTTTTAATGATGGCTTTCAGGTGGAGGTGCAGGGTCACACAGATGAGCTGTGGGGTCTGGCCTCTCACCCATTTAAAGCCCTCTTCCTCACCTGTGCGCAGGACAGGCAAGTGTGTCTGTGGAACTCAGTGGACCATTCTCTGGAATGGACCAGACTGCTGGACGAGCATGGTCACTGCGCAGACTTCCACCCTAGCGGTGCTGTGGTTGCCATTGGCACTCATTCAGGGAAGTGGTACGTTCTGGATGCTGAGACTAGGGACCTGGTGGCCATCCACACAGACGGCAATGAGCAGCTGTCAGTGATGCGCTACACTGTGGatgGTACACTGCTGGCAGTGGGATCACACGATAACTTCATTTACCTCTACACAGTGTCGGATAATGGACGCAAGTACAGCAGATACGGGAAATGCTCTgGACATTCCAGCTACATTACGCATCTTGACTGGTCCCCCGACAACAAGTTCATTATGTCCAACTCAGGAGACTATGAAATTCTCTACTGGGACATTCCAAATGGCTGTAAGCTGATTCGTAACCGCTCTGATTGTAAGGATATCGACTGGGCCACGTACACGTGTGTGCTGGGATTCCATGTCTTCGGAGTGTGGCCGGAGGGTTCAGATGGAACAGATATCAACGCTCTGGTCAGATCTCACAACAGGAAAGTCATCGCTCTGGCTGATGATTTCTGCAAAGTGCATCTGTTCCAGTACCCCTGCTCCAGACCTAAGGCCCCAAGTCATAAGTACAGTGCCCACAGCAGTCACGTGACCAACGTTAGCTTCATGCACAACGACAGACACCTGGTGTCGACAGGCGGCAAGGACACCAGCATCATGCAGTGGCGCTGCCTGGGCATGAGTGATCCCCCACACAACTCAAGCACACGAGTCCAGGCCCCCGTGGCTACTGTCCCCACCTCTCTGCCTATCACCAGAATGGAACCGGATGCCAATACGCCACCCCCTACACCCACTGAGCCGCTGGACGCCACTCCTAATGGACAGCAAGAAGACCATGAAACTCCGCCTCCCCCGGATGAACCCACACCCACTTCTGATAGCACCGTGAGCCCAAAGGACAGTCTGGAGCCAAGTGATGACACGGCCACGCCCAGCGATGAGGGCACACCCTTCACTCCACCCTCTTAAAACCGGTGGCCGAGGTGATTAGCCCTCGTCTCCATCTGAGTGCTCCACCCACAGGCACTAGGCTTGCCGTATAGGTTGATAGGGCATGCACAGGGGCTCCTTAAAATTTTAATCTTTTCAGGTTCTTTCTATGTTTCTTTCAACGTGTGTTTGTATGTCGTTAGTCcgagagggagaagagaggcaaaaaatgaatgaagtatCGCTGTTGTGTTGCCCAGGAGGAATCATGCTTCGAGTACATAGATAAAAGCTGTTGGAAATATGGAAACGGACACTAGCATGCCTggatacactgatacacacaaacactacagcaAACATGAGGTTTActccaacacacatacacaaacacatgggGGCACATaccaaaaaaacatattaatgaCAAGGATGTAGTAGATCATTGGATGGAACTTAACATAGAATAAAATATCAGCCagtataaatgcaaaaatataactgaaattagtgaaatgaaATATAGGCTTATGTTAAGACTTTTTAAACTAATCATTTACTTTGTTTTGTGAATAATGAGGAGtttcaaaaccttttttgtgaaATGCCTGCATAGCATCTTTACCTGAGCCaagaatattttgaaaatgcCAGGCAGGTAACACTGACGCATTGAATGGACTCACTGAGCTCATTGGCTTCTTCTGCGCAAGTTAGCATCATTGTGGACAAATTTTAAGCATGGCAtgaagctaataataataaatgttcatgATCGACTAGGTATATTATCAGCATAttatcacacacagacacacacatacacacacatacacactcacacagtttTTCTGAGGCTGCAGTTTgttcaaagccattttcttCTGGACATTTTCTCCTGTGTCTCTGAAGCTCTGCCCAGCACAGCATATGCAGATCAGATCAGCAGGCTGTCTGAATGTCTTCAGCATGGATCATCATGCAAACATCAGTTTTTCCTCCAACAGACTTAATCTAAACTTCTCATATTCAAACGGCGCAGTTTTAGCCTGTATTCTAAATGCTGTTCTCTTTCCATTCAAGTTGCTTTAGATTCATtttcagactgtttttttttttcattctgttcattggactgattttttttatcttgagaGTAGATTAAATGAGtcttaaatgtgtgtgattgtgtgtatatgagatCACGTGCAGATGAATGAGCTGacggttttgtttttttttttttttttgcatctttcaTTCCACAAGAAGGTGTTTGTGCACCTTCCTTTCCTCCCTCCCACAGGAACTCAGGATCACTCATTTAGGTCACCTTCCTAGTCAGAGTGTGGGAGAGAGCTCTGTCCTTgttctcctttctctttctcagagTGTTTTTCACCACTTCAGTAATGCATTGTGACAAAGATACTGGGCTAAAGGATATAATATTAAacaatgttttatgtattttaaacatgaacTGCAACACAGAAGAGCCTCTGCCAGTCTGCAGTAACACTGTGGCTCTTCACTCTCACTGTTTTTTGTTCCCAGTTATACAGAGATGTGCTATTTACAAATTCTAAAGAGTGATGCACCAAATCCTAACAAGATGCCTCCAACTTTCTGAAGATCAGCCTGTGATCTTAACTCTAGACCTGTTTTCAGCATGCACTCATCACCTTccctttgttatttatttagaccGTACAAAATGCTAAGGTGCTTCAGCTATATCGTGTTTGCTGTCCAGcctgttttcaaaaaaaaaaatgaaaataaaaaatcactgcTCAGTCCGGCTTACTCTTATAACCTCctgcttattattataaacttcTGCCCACTTCTGCTCACTCCTTCTCACTCTCATAACCTCCTGCACACTCTTATAACCCCTTCTCACTCCTGCTCACTCCTTCTCACTCTCATAACCTCCTGCACACTCTTATAACCCCTTCTCACTCCTGCTCACTCCTTCTCACTCTCATAACCTCCTGCACACTCTTATAACCCCTTCTCACTCCTGCTCACTCCTTCTCACTCTCATAACCTCCTGCACACTCTTATAACCCCTTCTCACTTCTGCTCACTCCTTCTCACTCTCATAACCTCCTGCACACTCTTATAACCCCTTCTCACTTCTGCTCACTCCTTCTCACTCTCATAGCCTCCTGCTCCCTCCTGCTCCCTCCTGCTCACTCTCATAGCCTTCTGCACACTCTTATAACCCCTTCTCACTCCTGCTCACTCGCATAACCTCCTGCTCACTCGCATAACCTCCTGCTCACTCTCATAACCTCCTCACTCTTATAACCTCCTGCTCACTCCTGCTCACTCTTATAACCTCCTGCTCACTCCTGCTCACTCTTATAACCTCCTGCACACTCTTACAACCCCCTGCTCACTCCTGCTCACTCTTATAACCCCCTGTTCACTCTTATAACCCCCTGCTCACTCCTGTACACTCTTATAACCTCCTGCACACTCTTACAACCCACTGCTCACTCCTGCTCACTCTTATAACCTCCTGCTCACTCCTGCTCACTCTTATAACCTCCTGCTCACTCCTGCACACTCTTATAACCTCCTGCACACTCTTACAACCCCCTGCTCACTCCTGCTCACTCTTATAACCTCCTGCTCACTCCTGCACACACTTATAACCTCCTGCACACTCTTACAACCCCCTGCTCACTCCTGCTCACTGTTATAACCTCCTGCTCACTCCTGCTCACACTTATAACCTCCTGCACACTCTTACAACCCCCTGCTCACTACTGCTCACTCATATAACCTCCTGCTCACTCTTATGGCCTCCTGCTCACTGTTGTAGCCTCCTACTTTCTCCTGCTCCTTATTATAACCTTCTGCCCACTTCTGCTCTGTTATAATCTCCTGCTCACTGTTATAACCTCTGATTCAGTCCTCTTCACTGTTATAACCGCTTACTCACTCCTGCTCACTCTTATAACCTCCTGCTTACTGTTATACCCACGTACTCACTCCTGGTCACTCTTATAAACCTCATGCTCATTATTATATCCTTCTGCCCACTTCTGCTCCCTGTTATAACATCTTGTTCAGTTATAACATCCTACTCATTCCTGCTTCTTGTTAGAACTTCTTGCCCACTTCAGCTCTATATTATAACATTCTGCTCACTGTAATAGCCTTGTACTCACGGCTGCTCCCTGTTATAATCTCCTGCTTACTGTTGTAACCTCCTACTGACTCCTGCTCACTGGTATACCCTGCATTATGTATGATGCACTAATGTGAAAGGAAGATGATAAGTGATTGTTGAAAAACGGATTGAAATGCAGGCCTAAACCTtttcacaatacaatacagggtctagaattttcaaaaaataaataaaaaagcagccTGGTCTCAGACATGTTGCTGGCGACATCTTCTGTACACTTGCAGCATTGCAAGGTATTGAAAGGGATGGATGAAAGTTTTAGTATTGAAATGTATGGATGAGTATGTATAAAGGCATGAGGTCTGGTGGTAATGCATGATTTCTCGTTAAACTGTAAGAATTGTGAAGGCATTAGGGAGTATTAAGAAGCATGGATCAAATACATGTGCAGAGTCATGGGGGTTTTATAAAGATTTTGGTATGTGAATGATGAACTtatgctgtgtttttatttttttttttttttttacatggaaGCATTCAGTATATAAAGTTCTGAGTGTATTTGATACTGGTCTAGTTGTAGGTGCCTGCATGTTCAAGAAAGCCATTTTGGCATTAGAAGTGTTTAATAGATGGAATGTAATGATGATATATGCCTACCAAGTTGTGCAGTGTGGTGTATCGCTGCAGCAGCGCTGTTACTACAGCCTCTCATCTCCAGCTGGTCTGCAGTTTTTCTAACCCTCTGGTTTATAAGGCTTTTTGGGAGTgctaccatttttttaaaaaatgatagttTTGGTGTTTTCAGAGAATGCCTCTTTTTGATTTCTGTAGACAGATTTGAATTTGCTTTTGCTGTAATACTTAGCTTTAGTGCAAAATGGCACAGTTCCTTTGCTCAGGGTCAGACCTGGTCACCTTCCTCTCCTACTTCTGCCTCTGTGTTGATCACCTTCTTAAAATTACAGcagatttccacacacaacatGCCCTTGGTCTTTGTGACCGGGCGAGCTTCAGGCTAAGTTCAGGGATTTCACAGGCTGCCATTTCCAGATACCATTTGTACATTCACATGTGGATACTATGTGTATATAATAGTtcctctgtatgtatatatataactcTGTGGGAATGCATCCTGTACAATAACTTGGCCATGTTCATCAAGGAAAGCCTTTTGGACAGTTCTGCAATCACTGATGCTGCAGAACCACACTGAAAACCTAGCGGATAAGAAATCAGGACAAGATCTTAAATCTCCAGTTAGATAGCAGCTTGTATGTAAAGGGGATGTTCTTCTTGGACATTCTGATTTACTTGGAAATTCTTTGGATACATTTTGCCTCTAGGACCCTTACTTGTGAAACTGACTTAACATTTTTTGCATCCAGTGAAGGTGACATTCAGAACACTGTTACCTGACATTGGTGTGTAAATAAGGGGCTTCATTAGGAATGTTTCTTGAATGTCACGAGTGGCCTTGCTATGTGTCTTCTTTGGGTGAGTGTGGAATATGATATTGgtaaatatattgtatttttttggtttttgaagAGGTGTTTTGTTTGATAACAGCTGGTGTGATATCCAGAAGTGCTTTTTATATAATTGAAATGGCACTGTGGATAAATGCATAGACGTTTATTGGGCAGGCCGGATCCATGTCTGACATTCAGTAATCAgactaatcttttttttttcaatggtctgtgtttctgaagtgtttctACAGACATTTACAGTCTCCGTTCCTGCATGAAATGGccttgtataaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60333 lncRNA downstream 670 22034943 ~ 22035162 (-) True G51050
TU60104 lncRNA downstream 32060 22001547 ~ 22003772 (-) False LOC113544581
XR_003404516.2 lncRNA downstream 32099 22001047 ~ 22003733 (-) True LOC113544581
XR_004577807.1 lncRNA downstream 139017 21893534 ~ 21896815 (-) False LOC113544235
TU60359 lncRNA upstream 21589 22107092 ~ 22192916 (-) True G51058
XR_004577862.1 lncRNA upstream 67845 22153348 ~ 22164424 (-) False LOC113538981
XR_004577861.1 lncRNA upstream 67845 22153348 ~ 22164424 (-) True LOC113538981
XR_004577859.1 lncRNA upstream 80236 22165739 ~ 22177331 (-) False LOC117596869
XR_004577860.1 lncRNA upstream 80236 22165739 ~ 22177331 (-) False LOC117596869
XM_026944078.2 mRNA downstream 125039 21908981 ~ 21910793 (-) True LOC113544981
XM_034303051.1 mRNA downstream 390320 21611663 ~ 21645512 (-) True plekhh2
XM_034303052.1 mRNA downstream 390334 21611663 ~ 21645498 (-) False plekhh2
XM_026935721.2 mRNA downstream 433573 21577863 ~ 21602259 (-) False si:ch73-105b23.6
XM_026934474.2 mRNA upstream 94644 22180147 ~ 22204975 (-) True pkdcca
XM_034302709.1 mRNA upstream 181193 22266696 ~ 22299362 (-) True ubr2
XM_034302710.1 mRNA upstream 181193 22266696 ~ 22299362 (-) False ubr2
XM_034302711.1 mRNA upstream 181193 22266696 ~ 22299362 (-) False ubr2
XM_034302708.1 mRNA upstream 181193 22266696 ~ 22299362 (-) False ubr2
TU60082 other downstream 85643 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 139555 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 421565 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 1666403 20357988 ~ 20369429 (-) False gng2
TU58943 other downstream 1666735 20357988 ~ 20369097 (-) False gng2
XR_003404067.2 other upstream 688852 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 688852 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 1362405 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1931761 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 2367616 24453119 ~ 24651847 (-) False lyst

Expression Profile