RNA id: XM_034302654.1


Basic Information

Item Value
RNA id XM_034302654.1
length 3839
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113538739
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22485310 ~ 22552752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTCACGTGACCGAGCTGGCGAGTCCGGGCGGCGCAGACGGAGCTGAACGCTGACAGAGGAGCGCGCGCCAGTCCCGGTGAAGAAGCTCCGTTATTgcgagcaagacagagagacaggaggaactagatacattacacacacacacacacacacgttacacacaGGAAGCCAGTGGGGGACTCGGACACAGAGTCACTCACCGCCTCCAAACTGTCGCCTAAAAAAGGAAGTAAAGGAGAAATCGGCTGAAATCTCAGCAGAGCGCCGCGCGCGCGACCGGGAGTTGCCTTTCTCTTCTGAGTAACTTGTGGAATTTATCGAGcgaaactaaaaaacaaaacaaaacaaacaaaaaaactagcTCGGCCTACCTCTGTGCCCTCGTGtacgtttttatttttgtatgattTCATGAGATTTTGCCAGCAGAATAACAGTCGGTGTGAGTAACAGAACTGCAGCAGTGACAGGAAACAGCAGCTTTGCTTGAGCACGCGAGCCTCCCGAAGTGCGACGAACACTTGCTCTTCTTCTTCAGCGCCTCTTTTCTActctatttaatatttatacgcTAACCTATTTGTGTTTCGGTGTATCCTGGGAACTGAGCTGTGATTTCTTGGAATATGGTGGGGGAAATGGAAACGAAGGAGAAGCCGAAGCCGAGTCCAGACTATCTCATGCAGCTGATGAACGACAAGAAGCTGATGAGCAGCCTGCCCAACTTCTGCGGCATCTTCAACCACCTCGAGCGCCTCCTCGACGAAGAGATCAGCAGAGTACGGAAGGACATGTACAACGACACGTTAAATGGGAGCACAGAGAAGAGAAGCTCAGAACTCCCGGACGCTGTGGGTCCAATTGTACAGCTCCAGGAGAAGCTTTACGTGCCTGTTAAAGAATATCCTGATTTTAATTTTGTGGGTCGGATCCTTGGCCCGCGGGGTCTTACAGCCAAGCAACTAGAGGCTGAGACAGGATGCAAGATCATGGTGAGAGGCAAAGGCTCCATGAGAGACAAGAAAAAGGAGGAGCAGAACCGCGGCAAGCCCAACTGGGAACACCTGAATGAAGACCTGCACGTCCTAATCACAGTAGAAGATGCTCAGAACCGTGCTGAGATCAAGCTCAAACGAGCCGTAGAGGAAGTCAACAAGTTGCTGGTGCCTGCGGCTGAAGGAGAGGACAGTCTGAAGAAGATGCAGTTGATGGAGCTGGCCATTCTAAACGGCACCTACAGGGATGCCAACATTAAATCACCGAGTGCCCAGGCCCCCCGCATCATCAGTGGCCCAGCACCCGTGTTGCCCCCGGCCGCCCTGCGCACTCCTGCACCTGCTGGCCCTACCATCATGCCCCTAATTCGGCAGATCCAGACTGTCGTGCCCAACGGCTCAGCTCACGCCCATGCTGCCGCTGCCACCCTGGTGCCTCCCGGGCCGGAGTCAGCTGGCCTGATTTACGCCGCACCCTATGAATACCCATACACACTGGCACCAGCCACCTCCATCCTCGAGTACCCCATCGACTCCAGTGGCGTGTTAGGTGCAGTGGCAACTAAAGTTCGAAGGCACGAAATGCGGGTCCATCCTTACCAAAGGGTAGTGACCACAGACAGAGCCACCACCGGCAActaacccctgaccttctgactTCTCAACTTCACCCAATGATGACCTGCCCATTGCCTGCCTGCAGATCACTTCTCTGCTCTAAAAACAAATGAGTGaataatacaaagaaaaaaagagcattaaACAGCTTTCACTGCACTGGCAGTGAAGATGCAGCATCTCTGCACCTGATCTGTGGACACACAGCAAAGCCCGGAAGACGCCCTCCAGTTCAAAAGGTCTGTAGGGAGCAGACCGTCCTGCCACTGTAGACCTGCACTGAGTCATTTGTAAGCAATAAGCAATAACAATTAGCCCACTCTGACCTGATCCTTCACCCACATACTTACACTTACCACATACTCTACAGCCCCACAACACATGACACGTGATGTTCCAAGCAAACACAGACCCAGCCTTCAGtcaagagaggaagaaaaaaaaccacagccctGCCCGTTACCCAGGTGTGACGGTGACACATCTGTCTGAATGtattatgtgatgtgatggtgtggCATTGGTGCATGCACCTTTCTGTCCCTGTACATTAGCTGTGTGAACTGGCGAAATCGCAACTCTGTCTTCTTCTCTGAAAACTGATTAAGGGATCAAAGGGAATTTTGACTCACATTAATGAGATTTGGCGCATTAATATAGGCAGTGCAAAGCGAATGATGAACATAGAGAGGTGTGTTTAGCATTTTGCCCAACAATCGAACACTTTTCAGTGAACGAGTTTTTCTGAGGATGTATAAGCCATGCTTGCCTATCTGCTGTACAAATGTATCAAATTTGTAGATAAATGTTcaaagatgacaaaaaaaagaaaatatgtacAGAAAACTTTTATTATCCTCCAGTTCAGGGGAAGagaaagtatatatttttacaacGGAATCTTTTATACAAGTAttgtaaagtgaaaaaagagaacacTAAACCCTTTATGTGAAAACAATCCCGTTTTCTGTAATTGGATGTAGAAATGGACGACCAAACCAACCTTTGCGTTCTGCTGACGGGGGGTTGAAATAGAAACATTACAAAGTGCCTTATTGTGGTTCTCATGGTTTCTTCAATCTGAATGTGTCATCATTAGTGGCGAATGAGCAGGCCAGCGCTCAGTGCACACATCTTTCTCTGAGGATAAGTTGCGCAGTCTTCTTGTTTCCCCTTTCAGTTCAGCATAAGTCAGTCATTACTGAAGAGGTAATAATGCACTGAATGTAAATTCTGAATCTTAATCCTTACATCCTCTAATAGGAAATGTAAATTGCAATATGGGCTGTTTGGTTAATTAGTGTGCTTCAACAAAGTTGAGAAACAATCATGCCTCCAGCCTCAGACAACCGGATTATGCTTTTAATATTGTAGCCAATATTCCACCTGTGATCCTTTAATAATCTGTGAACATTTATGGTGGAatttattgtcttgtgttttCAGCCTAACAATAATAGAATATGCCACTGTGAACATTGCAATATGAGTGAATTGTAACAAAGTTGCACCGACGTCACTGTATTTTTCACTGGAAGCTGTGTGCACTGCCCATGCTGGACTGCACCATGTGTTACGTGTCTCCCATCCCCCAAATCTTTCTTTACTATGCAACAAAATGGCCTCTGATGTCATTGTGGGGGTCTCTGAGTCATTGAACATGTCTTCCTGTGCCATCCTCACTTCACTAccactttcagttttaattccGCAGTACCGTGACCGTATTATTGTAGTTATGAAGGCACTAAAGTTGAAGTTCAGCCTGTATTTTGGAATAAGATGAAAATAGCCTGTATTTCAAAAGCATTGCTTCTTAGTAGTTGAGATTATGAAAATGGTCAAATCTGATCTGCTTGACAGTACAATACAGGTTAGAGCTATCTGTGGATGAGCCACACCGTACTAAATATCGCATGATATTTCACCCTAGATAGCAATTAAAGTATAAATCTggtttgtgttgttttctgaTCTTTGTTTCcaaaattttcaattttatttctgtgaatGTTCTTTATTATATGAGTGAATAAGTGTattacacacatgcagacataAGACTGTGTTAGATTCATGCTATGTGTGCCCCTACCCAGGTATTGCCTATGAGAAGATATGTATGTCTGTATCAACAGCCATTGTTACAAGTTTATACCTTATTTTTCTatcttattttatatgtatgtaataaacTACATTAAATGCCTTGTCTCAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403906.2 lncRNA upstream 35801 22424419 ~ 22449509 (+) True LOC113539127
XR_004577857.1 lncRNA upstream 35801 22444754 ~ 22449509 (+) False LOC113539127
TU60200 lncRNA upstream 148266 22266697 ~ 22337044 (+) False G50929
TU60216 lncRNA upstream 197208 22285438 ~ 22288102 (+) True G50938
TU60202 lncRNA upstream 216802 22266697 ~ 22268508 (+) True G50929
XR_004577901.1 lncRNA downstream 176570 22729322 ~ 22736667 (+) False LOC117596907
XR_004577900.1 lncRNA downstream 176580 22729332 ~ 22736667 (+) True LOC117596907
XR_004577902.1 lncRNA downstream 176900 22729652 ~ 22736667 (+) False LOC117596907
TU60716 lncRNA downstream 358392 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA downstream 358392 22911144 ~ 22913537 (+) True LOC113540861
XM_026943156.2 mRNA upstream 219891 22244109 ~ 22265419 (+) True prph2b
XM_034302562.1 mRNA upstream 461750 22020322 ~ 22023560 (+) False wu:fj16a03
XM_026932110.2 mRNA upstream 514350 21967741 ~ 21970960 (+) True LOC113537563
XM_026932766.2 mRNA upstream 524911 21954905 ~ 21960399 (+) True LOC113537982
XM_026932775.2 mRNA upstream 524911 21954905 ~ 21960399 (+) False LOC113537982
XM_034302782.1 mRNA downstream 18619 22571371 ~ 22587644 (+) True timm23b
XM_026938663.2 mRNA downstream 18619 22571371 ~ 22587644 (+) False timm23b
XM_026945034.2 mRNA downstream 48804 22601556 ~ 22608030 (+) True yipf3
XM_034302890.1 mRNA downstream 55727 22608479 ~ 22621693 (+) False lrrc73
XM_026937420.2 mRNA downstream 56614 22609366 ~ 22621693 (+) True lrrc73
TU60121 other upstream 461499 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1479791 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1909831 20574973 ~ 20575479 (+) True G49862
XR_003403774.2 other upstream 3129212 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 231576 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 561433 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 901676 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1144280 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1240928 23793680 ~ 23805495 (+) False slc29a3

Expression Profile