Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU60717 |
| length | 702 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC113540861 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 22911144 ~ 22913552 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577901.1 | lncRNA | upstream | 174477 | 22729322 ~ 22736667 (+) | False | LOC117596907 |
| XR_004577900.1 | lncRNA | upstream | 174477 | 22729332 ~ 22736667 (+) | True | LOC117596907 |
| XR_004577902.1 | lncRNA | upstream | 174477 | 22729652 ~ 22736667 (+) | False | LOC117596907 |
| TU60476 | lncRNA | upstream | 360970 | 22531151 ~ 22550174 (+) | True | LOC113538739 |
| TU60728 | lncRNA | downstream | 44863 | 22958400 ~ 22958620 (+) | True | G51358 |
| TU60802 | lncRNA | downstream | 156784 | 23070321 ~ 23070713 (+) | True | G51422 |
| TU60805 | lncRNA | downstream | 159419 | 23072956 ~ 23145137 (+) | True | G51425 |
| TU60806 | lncRNA | downstream | 161193 | 23074730 ~ 23076471 (+) | True | G51426 |
| TU60889 | lncRNA | downstream | 293578 | 23207115 ~ 23275341 (+) | True | G51501 |
| XM_026937432.2 | mRNA | upstream | 20275 | 22870890 ~ 22890869 (+) | True | LOC113540824 |
| XM_026937440.2 | mRNA | upstream | 23432 | 22871201 ~ 22887712 (+) | False | LOC113540824 |
| XM_026937459.2 | mRNA | upstream | 165340 | 22742727 ~ 22745804 (+) | True | mea1 |
| XM_026937451.2 | mRNA | upstream | 165340 | 22742727 ~ 22745804 (+) | False | mea1 |
| XM_026937376.2 | mRNA | upstream | 190256 | 22703520 ~ 22720888 (+) | True | dlk2 |
| XM_034302932.1 | mRNA | downstream | 10984 | 22924521 ~ 22927550 (+) | True | si:zfos-1056e6.1 |
| XM_026937324.2 | mRNA | downstream | 68065 | 22981602 ~ 22986797 (+) | True | dld |
| XM_026941717.2 | mRNA | downstream | 138691 | 23052228 ~ 23069644 (+) | True | actr2b |
| XM_026941706.2 | mRNA | downstream | 157771 | 23071308 ~ 23101134 (+) | True | spred2b |
| XM_026935614.2 | mRNA | downstream | 306584 | 23220121 ~ 23276316 (+) | True | meis1b |
| TU60615 | other | upstream | 124639 | 22784328 ~ 22786505 (+) | True | G51271 |
| TU60121 | other | upstream | 887333 | 22021407 ~ 22023811 (+) | True | wu:fj16a03 |
| trnae-cuc_10 | other | upstream | 1905625 | 21005450 ~ 21005519 (+) | True | trnae-cuc_10 |
| TU59013 | other | upstream | 2335665 | 20574973 ~ 20575479 (+) | True | G49862 |
| XR_003403775.2 | other | upstream | 3555046 | 19341350 ~ 19356098 (+) | False | sfxn5a |
| XR_003404579.1 | other | downstream | 200648 | 23114185 ~ 23115039 (+) | True | LOC113545030 |
| TU60962 | other | downstream | 540891 | 23454428 ~ 23455549 (+) | True | G51562 |
| TU61166 | other | downstream | 783495 | 23697032 ~ 23697294 (+) | True | G51749 |
| TU61214 | other | downstream | 880143 | 23793680 ~ 23805495 (+) | False | slc29a3 |
| TU61306 | other | downstream | 1141704 | 24055241 ~ 24057887 (+) | True | LOC113540163 |
