RNA id: TU60802


Basic Information

Item Value
RNA id TU60802
length 393
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G51422
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23070321 ~ 23070713 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaATTGTTTagccttttcacttttttttgcattacattttGTCTTTTGCAGTGCATTATTCAGACTGTCTGGCATAGAATGCATCAGTGTGTAGTCTAGTAAAGTTAAGACAAAATGAGTCACTTTGTAACCGAAGGGGGAATCTAGTATGACTGATGCttgtgaaatgaataaatatgtgatGGATAGACATGGAAATATTATggggttaattttttttcatgtgtgaGTGTCGGGGCCTCATGTATACTTGAGGCACCTCTTGCTGTCTGTATGTacatttccataaatgtttatctGGTGCCAAGGGCAGTTGATGTGGCTGGATCTCCTATTGCTCTTTTTTTGATCATAGCATAACTGCCTAATGCTGATTTAAATAAAGACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60728 lncRNA upstream 111701 22958400 ~ 22958620 (+) True G51358
TU60716 lncRNA upstream 156784 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA upstream 156784 22911144 ~ 22913537 (+) True LOC113540861
XR_004577901.1 lncRNA upstream 333654 22729322 ~ 22736667 (+) False LOC117596907
TU60805 lncRNA downstream 2243 23072956 ~ 23145137 (+) True G51425
TU60806 lncRNA downstream 4017 23074730 ~ 23076471 (+) True G51426
TU60889 lncRNA downstream 136402 23207115 ~ 23275341 (+) True G51501
TU60900 lncRNA downstream 207210 23277923 ~ 23361488 (+) True G51511
TU60964 lncRNA downstream 386296 23457009 ~ 23457309 (+) True G51564
XM_026941717.2 mRNA upstream 677 23052228 ~ 23069644 (+) True actr2b
XM_026937324.2 mRNA upstream 83524 22981602 ~ 22986797 (+) True dld
XM_034302932.1 mRNA upstream 142771 22924521 ~ 22927550 (+) True si:zfos-1056e6.1
XM_034301913.1 mRNA upstream 156769 22911706 ~ 22913552 (+) False LOC113540861
XM_026937432.2 mRNA upstream 179452 22870890 ~ 22890869 (+) True LOC113540824
XM_026941706.2 mRNA downstream 595 23071308 ~ 23101134 (+) True spred2b
XM_026935614.2 mRNA downstream 149408 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA downstream 149412 23220125 ~ 23275640 (+) False meis1b
XM_026939527.2 mRNA downstream 357304 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_034303047.1 mRNA downstream 734224 23804937 ~ 23834851 (+) True slc29a3
TU60615 other upstream 283816 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1046510 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2064802 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2494842 20574973 ~ 20575479 (+) True G49862
XR_003403775.2 other upstream 3714223 19341350 ~ 19356098 (+) False sfxn5a
XR_003404579.1 other downstream 43472 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 383715 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 626319 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 722967 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 984528 24055241 ~ 24057887 (+) True LOC113540163

Expression Profile