RNA id: TU60805


Basic Information

Item Value
RNA id TU60805
length 1551
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G51425
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23072956 ~ 23145137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACCTCAGTGAAATTTGATAAAGCTcatgtgtaaaatgttttcttgttttgctAAAGCATCCTGTCTCCTGTCTTTTAAtgcacatttcattattttccctGTGCATGTAGACTGTATGTGCAGGGCTTGGATGTAAGGCTTGGTTCTGGGCTTCTCGTCAGGCCTTTCTGAGCTCCAGACTGATTTACCTGACTCGTGCATACAGCGCGCAGCTATCGCGAGAACTTACGGCTAAGTTTCTAAAAGCAGAAAATTGAGGCCTCAGTGTTGAATGAACGCAGTTTTGTCCTACGGAAGAGGGCAGAGggagggttttttgttttgtttttttttcctctctccacgCTTGACGCTGCTCTCATTCATAAAAGAGCTGAAGCGCCAGGCCGCGCTCCATTCAGCAGGCTGCACAGGCTCAGCGTCCACAGACACGCACTAGCCGCTAATAAATAATGCGACTAAATCATGTACTGTTTTGCCTCCTACTTCGTACCACAGTATTCGGTTTGGGACACGGCCATCCATCTGGCTCGCGTGAGATATTTTGGATCAAGTTTGATTTTCTGAAGCGACTGGAAACACGCTATTTAAAATACTGAGCACCTAAATAtcatcaaatatatatatatatatctttttgtTTAATTCCTTGAGCATTACAGACAAGCAGTTAATTGAAAGAGTTAAGCTAGCTTCCTGTGTGCTGGCTGTGGGAAAGCAGTAAGCTATAGGATAAAGGTTAGCTCTGAGTGCTGTGCTAGCCAGTAGCTGTATACTCGCTACATCAGTTAGCATTCAACTAACtcgtttaataaaaataaaaaacattattttaaaccCCGTGTAACACTGAAATTGGGTGATATACCTCACCACACTGTCACACAGTTGAGCATGGACAGACATACCCAGTGGCTAGCCATGTCACTGTGTTCATCCTGGCAGCATTTGCACAACACAAACATGTGCTCGGTTTGGCCCAGAGGAAGACCACGATGAAGAAATGGCACTCAGCTAAAGGTCAATGTAGCCATGGGCAATCCTGCACAGCAAGAATCGATTTCACATCCTCATTTTCAGTGTGACTCACAGGGCCAGGCTCTgctttcaattaaattttaactttttacaGCTGTACAAACCTTGTGACTGTGCTAAATAGTCTCAGTGAATGTCCTTTAACAGTATAAAACCTGTAGAGTTACAGAGTTAATGACTAATACAGTATGCATCAGTTTAGCAGAAATATGGAAATGGGCTTTAATCCCCTGTACAGCTTTTGTGACAGTAATGTACACCTCAGACAGAAGCGTACACTTCAGGAATTAATTTGACCCACAAAGATTTCTGTCAACCAGTTATTTCATCTCAGCATTGTTTTTAATACGTGCTAGTGTTCGACATCTCAGCCACATGAGGAACACAGTGGAAGGTGGTTTGAGAAGTGATATGTGTTATGCCTCTTTCATTGATTTAAGATGTGCACTGATGATCACTTCATTTTCTGTAAGAGGATACAtggctggtgttttttttttttttttttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60802 lncRNA upstream 2243 23070321 ~ 23070713 (+) True G51422
TU60728 lncRNA upstream 114336 22958400 ~ 22958620 (+) True G51358
TU60716 lncRNA upstream 159419 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA upstream 159419 22911144 ~ 22913537 (+) True LOC113540861
XR_004577900.1 lncRNA upstream 336289 22729332 ~ 22736667 (+) True LOC117596907
TU60889 lncRNA downstream 61978 23207115 ~ 23275341 (+) True G51501
TU60900 lncRNA downstream 132786 23277923 ~ 23361488 (+) True G51511
TU60964 lncRNA downstream 311872 23457009 ~ 23457309 (+) True G51564
TU60961 lncRNA downstream 314476 23459613 ~ 23460865 (+) True G51561
TU60965 lncRNA downstream 319116 23464253 ~ 23465415 (+) True G51565
XM_026941717.2 mRNA upstream 3312 23052228 ~ 23069644 (+) True actr2b
XM_026937324.2 mRNA upstream 86159 22981602 ~ 22986797 (+) True dld
XM_034302932.1 mRNA upstream 145406 22924521 ~ 22927550 (+) True si:zfos-1056e6.1
XM_034301913.1 mRNA upstream 159404 22911706 ~ 22913552 (+) False LOC113540861
XM_026937440.2 mRNA upstream 185244 22871201 ~ 22887712 (+) False LOC113540824
XM_026935614.2 mRNA downstream 74984 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA downstream 74988 23220125 ~ 23275640 (+) False meis1b
XM_026939527.2 mRNA downstream 282880 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_034303047.1 mRNA downstream 659800 23804937 ~ 23834851 (+) True slc29a3
XM_034302983.1 mRNA downstream 723014 23868151 ~ 23999400 (+) False lrrfip2
TU60615 other upstream 286451 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1049145 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2067437 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2497477 20574973 ~ 20575479 (+) True G49862
XR_003403775.2 other upstream 3716858 19341350 ~ 19356098 (+) False sfxn5a
TU60962 other downstream 309291 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 551895 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 648543 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 910104 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3840841 26985978 ~ 26992711 (+) True G53328

Expression Profile