RNA id: TU60916


Basic Information

Item Value
RNA id TU60916
length 5834
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G51523
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23260196 ~ 23266336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacagagacacataGGCAAACTGATAGTGTGGCTGAGGAGTGTAGTGAGGAATGCTTAGCTTTCATTTCAGTAGAAGGCTCACTTATTGGCCTATATGAAGCTTGTTATTAGTGCTCTGAGCTATTAAAAAAGCTGTTGAATGATTGCTATTTAGataggtaggtagatagatagatagttatatagatcagagagagagagagagagagagagagagaaggtctTGCACTCCCTTGGAGCTGGGGAATATGAGGTCATTTTTGGCAGCTTGTGGTCAGCTTGCTCTCGCACCCCAGcctagagagagtgagagagagagcatctcATCTCACTTCACATATTTAACTTCAGAATGTGTGCTGCGTCTGTTCATCTCTGGCTTTTGAGGCCTTGTCTCTGGTGCCCCTAAGTCAATTGGGCCAAGGAGCATGTCCTCTCTGTCCggacaaaacacacagagagcagcAATGTAGGctggcagcagtgtgtgtggtagCACAAAGCTCATTACATCAGCGTATGAGGAAGAAGATATGACTGCACGGCAACGTGTTTTACGCCTCTTATTACTATGATTTCCATCAGGTCCTTTAGCACTGGCACTGCCATCTCTAGCTGTCACCCCAGCAATACACTCAATCGACCAATCTGTAAGCAAGCAGCCagataaaaaatgtaaacttgAACTTACTTATGGACATATATGTagttttttcaggtttttcagtataaaaaaattgaaagaagTCAATGACACTTCTctgaaaataaccaaaaaataaGGACTGCATGAGATTGTCTGACAAAGTCAGGTTTCTGAcaaatatgcttttattaaGATACAAAaccttaatgaaaatgaaattgtatTCTTTTCAATTCTTGAAATTGCATTCTTTTGACAATTCTTGATATGGACACAAAAACAGAAGTAAAAACCAAGCCAATGTTTTCATACATGGCACTGCATATCCACTCTCAAACGTTCATATGTAGAAgaaagagataaacagagaaagagagaaatgatggAAAATATAGGCTGTGTCTTGGGCTCACTGTGATGTAAGATGGGGGGAGGAAGAGTTGAACCATTGTATGGTTCACAGACTCTgttcaaatgcacacacacacacagccacagagctgccacatacagtacatcccCAAGCTCAGAAACAAAGGAACAGCAACAATGCACACACAACAACCACCCCCCCAAAATATGGCTTCATGAGGAGGAAACACTTTCTCACAAgtaacatatacacacatgcacactctcaGATGCTTTCATACACATccacccaaacacacaaacacaatctcaTACACACAGAACCACTCCAACTTGTCTGTTGTTGACATAACGCAGATAGAGATCAGGTCTGAGCAAGTGCAGAAATTCCAGTATGGCACAATTGTTAGCAAACACTCAAGAACTGATTGAGCCCAAATGAGGAGAAggacaaacaataaaaatacagagcCTCATCAATCTGCACTGGCTGACGTTCCTGAAGTTCATGGGGCGAGGCGAGTGTGTggcagtgtgtttatgtggtgaGAAGGGGTAAATATGGCTTTTGTTCAGCAGGGTGACCCCAGGTAGAGCTGGTGTTTCAGTGAAAAGCCACAGAGATTCATGGAAAAGCACATTTACAGCATGGCGCTATGAAAGCTGCTTTAGGGcatacacatactacacacacacacctcatttacaGCCCTGTAAAATCTCCTGtgggtcacacacacatgcaatgaGCACACAATCAGTGTCTAACGTGTGAAAACACCTAATCTAGAATCACCCGAAAACTCTAAACCCACATAAACAACCACTACAACAGTGTAACAATCATTAGAGATACACGCTAGATCAGAGGTCACGTTTTTCCACCAAGGCTAAAGAGCACTGCCAATGAATACACATTCTGAGCATGGAGCAATCAGCAATAGCTTACTCTGAACAAGTTTCAACTGCTTTTATCATAAGCAGGCCTGGCTGTTAGCAAGGTGAAGCATGCcaatcatctctctctgtctctctctctctttctctctctctctctctctctctctctctctctgtcattctctcagGCAGAGAAACCGGATCCCAGGACGCTATTTCTCTAAAGTAGCGCCGCCACACTTCTCGCCATGCTTTTAAGACTTTCATAAAAGCCGTCTTATTGACAAAACAATCCATCCCTGAGGTTTAAACACCATCTTTAAGGGCATTATTAAATTCCGCCAGGAAGGGAGGACTGGACATGCGAAACCCGATGACCCGCCCATTGATTTCACATCAGCGCTCTTTATGGAGCATTCTGAGAACACACACTTGCTCTGTTATCATCAGAGACTAAaactccttttccttttctctctgtctctcccttcttttctctttcttcctctctctctcttgttacTGTAATGGATCTACAGGTCTTTTTCACTGTACTTTCTGTAACATAACACAATATCTCAGTATATCAACCTGAGCACAGTTGCCAAAAATAGATGTTGTAGTCAATCCACAATCTCCACCCACTGCTTGCCTGTTTCAGCTTAACAATGTGTGCTCACGcatgtgtttctgtttcagtgCTCATATGAGCATAACACTGTGTGCATGGGTGTGAATAAAAGTACATCTTTGCCATGTGTTTTCATCTATGTGcttttttattcagattttccCATGCAGATTTGCATCTAGAGTGCCATTGTGGGAGCAACtgtttttcaaatttaaatatCCAGTTTGAAATCGCCCCGAAAGCCATGCTTGAAACAATAATTCCTGAGTGCACACCCTCCCCTgctttagcatttttatttaatcccCAGCTTGCCGATCCACAGGGCCCTCATCAATAATGAAGCATTACATGTGTGTTAACAAGTCTACAGCAGCATAGCTGATCTCTTCTTTACCCCCACATAGTTAATTGGTTTGAATATGAGGACAGCACTGAATGCACTGATTGTGACCATAAATCACCTAACTAGTTTCTAATGAGACAGGCTgaaaaataagtgaataaaatgtgcatgtttgtgAAAGGAGATAATGTTGGTTTAATCTAGAGTGGCTGCTGTTGCTTGCTCCGTTTGATGAATTTCATCACTCTGGTTTTGGAGTGCTCAGCGCTGTGTTGGCCCTGTGTTTTGACTTGCCTGATAAATAGAATCCCAGCTCAGGATGTTGCCTTTAAAATCAGTGGGTCAGGAGGTAACATCACGAGGGGTTGCCATGGAGACGCCCAATGGTGAGATTCCTACCATGCACTACAGGCCTATGGAGCTGCAGATCCCGCATACTACCccatggagtgtgtgtatatctatctctccttccttctctctccctccctctttttctcctaAGATACTTTCCACATTTCCCCAGTTCCCTTAGACACATATAagcacattaaaacacacacactcactgtagaAAACAATGTGTGTAGGGCACAAACATCTTAGCATGCAGGGTTTAGCATTAAACCCTAGCCTTTAACCACCCCTGACTCATCATTAATAACACAAATGTGACACAATAACGCACATACATGCTCAGTTTGCACTGCTACAATTCCACTATCAGCCCTGCCACACAAGAACTGGTTAAATGAGGAACATAGTCATGTGACAACCTGTTCTCCAGGGCATAATGTGGCCAAAAGAATTTCCCATGGGTTACTGTGAGGTCACAGAAATTGATAACCTCAACAATATTCCCTGGTGTTATTCAGACTGTGCATCACCAATACTGGATTTGCGAAAATTAATCCGCTGAAGGCGTATATTGCGAGTAGGCTGTTGTCTCCAAGGTACCAAATTGAACAATGGCACGGATTATGTTGTCAGAAATTACATTTGCCCTAATGGGCTTTAATATGTCTCCCATATTTCCAGTCTAGGCTGATGTCCACATCCAGCGATGGCCTGTTAAACACAGGCTCTGCCTACATCAAGGCCAATTGATTCAACAAAACAGATTAGAGCATATTAATCTCTTAGCTTTATAGAATATGTAATAAAAGCTATCACACAGGCTGGGTGAGACTTTCATGTTGTGACCTGGCAACCTTGTGGAACATAAATGTGTGGCATTGGTTTTTACAAGACTGCTATCAAAAGTGCCAGTCTGAACCTGGTTTCAGTGGCCTCCCCCACCTCTCTTGGGCCATTCGTTAGACACAGCTAATAATGGTAAGTACGTGCTGATGGCTATCTCCAATGAAATGTGACCTGGGATGAAATCTCACTCCAAATTTATTGGGACTCCAGCAATGGGAACCGAGGAATCACAGGAGGTAGTTAACTGTGTGTCCCATGCAAGTGTGCAGTACAGGCTAGGTTTTGGAATAGGATTTAGAGAGACATGCGAGGTTCACTTCTCAAGGGAATTGCTATTAGGTTCACACTCAGAACATTGACGCATTGTCTCTTGAGAAATCCTAGAGCTATCTTATTGGGTGGATTGATGTGCAGGCAGATGAGGTAGTAAGGGGAAGGGAGGTCAGGCTTTGGGACTGGGCGGACTATTAATTCAAATAATTAGACACTGCTTGCCAGAGGCAAGGCTATtgtttgcatgtaaacacaaaaaGTACAATTGACTTACCAGTTGTTCACTTGTAGTATGGTAAGGCCAGTGTCTTGGGCCAGctgttttttctgttcttctgaGGGGTAGTTATTTCAGTGCAGTGCCCCTTAGCTGTGCTGCCATGAATACGGAATATGAAATAGAGATTTCTAAACACATCTTCTCCATGGAATAGAGGGTATCCATTTCTCACTGTTTGAGTACCACCAATAACACCTGTATGTAAATCTCTGCCGGATATGATGTGCCAACTGTCCTTTTGTAATCAGTCTTGTCCTTTAATAGCAGTTGACGGCAGTCTTTAATCTTTGGGTTCCCAAGTAGTACAATGAAAAAGTGTTATCTTATCTCCTATCATCCGGAGATCACAAATTGAGTCCCAACAATGGCACAGCCATATTCTCTCACCCCTGTCATGGCAATCATGGGTCGCTCATGCATGGCAGTCTGGGAGCTCATGCTTGTAGAATATGGCAGATAGAGTTTtcttccaagtgtgttacgctgcactGTGACGCTGCATGTTTGGCAGTTTGGTAGATGTCATGTGAATGGGGAGAGTTAACTAGTGGGTGGGCACTAGCATGACCAAAGAAAATGGGGGAACCTCCTccccctaaaaaaaaacaaaaaactttaatCTTTGTTGTGGTGGACCTGAGTGGAACCTGGTGACTAGAAGACTAATCCACATTTGGCTTAGAAGACGACAGTCTCTGTGGGGCTTTTAAAATGGTAAGAGTAGACAAGAGTGTCCCCAGTAAAGTTATGctacagagacagggagaggaCCTGCTTTGTATAGCATCACTTAAAAATGACCTCTCCTGCATTCATGTGTCCCTTACTCCTCAGTATTCAACACAATACCCCTGGTCTCAGAATAATGTCTTGTAGAATGTTCATAGACTGTAATATTAACTATTTGGAACTTTATATATGAGTTAGCTAGCATATTCTCACACTTTGCTATCATGAGAACATGTGGGTCACTGGGTAGCCCCATGCTTCACTGGTAGATCAGCATCTCTAAACCCATTACTAGTGCCTGAGCTTGCCATGGATTAAACCATATCAAGTGCTTAAACTGGACTAGAAGGTGTGGACTCATCAACACAACTTGAAGTCTCTAGTACAAAAATTAATACTCCAGAGTGCCCTGTGAAACAATACTTGCCTGTACTGTACAACACACCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403951.2 lncRNA downstream 41439 23215848 ~ 23218757 (-) True LOC113539667
TU60844 lncRNA downstream 189475 23070343 ~ 23070721 (-) True G51462
TU60769 lncRNA downstream 369689 22890297 ~ 22890507 (-) True G51390
TU60768 lncRNA downstream 369922 22890059 ~ 22890274 (-) True G51389
TU60643 lncRNA downstream 516924 22647350 ~ 22743272 (-) True G51289
TU60957 lncRNA upstream 147344 23413680 ~ 23413941 (-) True G51557
TU60980 lncRNA upstream 191164 23457500 ~ 23457991 (-) True G51577
TU60982 lncRNA upstream 200610 23466946 ~ 23470699 (-) True G51579
TU60983 lncRNA upstream 205331 23471667 ~ 23472219 (-) True G51580
TU60984 lncRNA upstream 205963 23472299 ~ 23474091 (-) True G51581
XM_034303119.1 mRNA downstream 211072 23032198 ~ 23049124 (-) True phf10
XM_026937353.2 mRNA downstream 282553 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 282553 22964720 ~ 22977643 (-) True fam120b
XM_026937357.2 mRNA downstream 325335 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 336456 22913819 ~ 22923740 (-) True apmap
XM_026941612.2 mRNA upstream 406083 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA upstream 406083 23672419 ~ 23679731 (-) False c1d
XM_026942047.2 mRNA upstream 460816 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 460816 23727152 ~ 23750761 (-) True kifc1
XM_034303048.1 mRNA upstream 571603 23837939 ~ 23840860 (-) True mgme1
XR_003404067.2 other downstream 471413 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 471413 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 1158813 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1310007 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 1363919 21896184 ~ 21896277 (-) True trnai-uau
TU60979 other upstream 181572 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 750928 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1186783 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1205367 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1415910 24682246 ~ 24735887 (-) False herc4

Expression Profile